Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1019 ATGGAGAAGAAGAAATTAGAGGAAATCACTGAGAAGAAGAATAATAATAATAGTAATTATAGTAATTATTATTCTCCGATGTTATTTCCCGATGATATTCCGGCGAGTTTTGCTTTATCTAGCATATTTGATATGCCGCCATGTGAGAGTTTTGATAAGGGTTGTTCTAGTTCTAGTTCTAGCTTTGATTTATTTGGATTCCAAGATTATTACAACAACAGCAACAGCAACAGCAACAACCCTTCTAGTTTGTTTGATTTGTTGTCGGAGCCACGTCAGCATCATCAACAACAACAACCGTTTTCTTCGCCGGCTTCCACCGTTCCTGACTCATCGGAAGTTTTGAATGCTCCGGCGACGCCTAATTCATCTTCCATTTCTTCTGACTTTCATGAAGAGGTTGCTAATGAAGATCTTATAAGTAAAGGAGGTAATCATCATGAGTTTGATGATGATCAAAAGGATTCAGACAAAGCTACCGAATTATTGAAGCCAAAAAAGAAGAATCAAAAGAGGCAAAGAGAACCCAGATTTGCGTTTATGACAAAGAGTGAAATTGATCATTTAGATGATGGTTATAGATGGAGAAAGTATGGCCAAAAAGCAGTCAAGAACAGCCCCTACCCCAGAAGCTATTATCGTTGCACTACGGTCGGCTGCGGCGTCAAGAAGAGAGTAGAACGGTCTTCCGACGATCATTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCCAAGTCCAGTAATGCCTCGAGGAAGCATCAGAATGATGCCGGAATCCACCGCTCCCACCATCGGTTCACGCTTCGTCTTACCGGAGTTTCAACGACAGAACCATAATATTAATCTGCAGTCCTTGATTTATAATACTCCCCCATCGCTTTTAAGTGTTGTAGGCTCTTCTTCTGGAACTACCAATCCTTCAATGGAAGAGAAAAGCTTTAGCTCATCTTCTTTCCTGAGAGACAATGGGCTTTTACAGGATATTATTGTGCCATTGCAGATGAGGAAGGAACCAAAAGATGAGCAAAATGGCCAAGTAAACTAA 1053 41.12 MEKKKLEEITEKKNNNNSNYSNYYSPMLFPDDIPASFALSSIFDMPPCESFDKGCSSSSSSFDLFGFQDYYNNSNSNSNNPSSLFDLLSEPRQHHQQQQPFSSPASTVPDSSEVLNAPATPNSSSISSDFHEEVANEDLISKGGNHHEFDDDQKDSDKATELLKPKKKNQKRQREPRFAFMTKSEIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDHSVVVTTYEGQHTHPSPVMPRGSIRMMPESTAPTIGSRFVLPEFQRQNHNINLQSLIYNTPPSLLSVVGSSSGTTNPSMEEKSFSSSSFLRDNGLLQDIIVPLQMRKEPKDEQNGQVN 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41611714 41612981 - evm.model.ptg000013l.1019 HCH7g1019 548304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1019 350 MobiDBLite consensus disorder prediction 91 129 - -
HCH7g1019 350 MobiDBLite consensus disorder prediction 1 21 - -
HCH7g1019 350 Gene3D WRKY domain 174 250 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1019 350 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 257 IPR044810 GO:0003700(InterPro)
HCH7g1019 350 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1019 350 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1019 350 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1019 350 SMART WRKY_cls 189 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1019 350 FunFam WRKY transcription factor 57 175 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0140 HCH-Chr4:781371 HCH7g1019 HCH-Chr7:41611714 3.70E-39 dispersed
HCH4g1092 HCH-Chr4:7073456 HCH7g1019 HCH-Chr7:41611714 2.00E-41 dispersed
HCH6g0414 HCH-Chr6:9876410 HCH7g1019 HCH-Chr7:41611714 5.00E-46 dispersed
HCH7g0047 HCH-Chr7:332760 HCH7g1019 HCH-Chr7:41611714 3.70E-34 dispersed
HCH7g1019 HCH-Chr7:41611714 HCH9g0052 HCH-Chr9:321993 1.20E-27 dispersed
HCH6g0445 HCH-Chr6:12418281 HCH7g1019 HCH-Chr7:41611714 4.80E-15 wgd
HCH6g1759 HCH-Chr6:50053472 HCH7g1019 HCH-Chr7:41611714 4.10E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33892 PF03106 WRKY 6.40E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1019 - - - 0.0