Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1026 ATGGTTTCTAGTAATAGGGCAACGCATTCTCATCAGCAACAGCAGCATCAGCAGCAACAACAAGCGCAATCTTCAAATACAAATACAAGCAATCTCCGATCTCTCCGTACAGATTCCATTAGCAAAGCTGTTGCTCAATACACTGCCGATGCTCGTCTCCATGCCGTTTTCGAACAATCCGGTGAGTCCGGTAAATCCTTTGATTATTCTCAGTCTATTAGAACTTCCACTCAATCCGTACCAGAACAACAAATTACTGCTTATTTGTCTAAAATTCAAAGAGGTGGTAGTATTCAGCCTTTTGGTTGTGTGATTTCTGTTGATGAACCTACTTTTCGAGTTATTGCGTATAGCGAAAACGCCCGTGAATTGCTCGGTCTCACGCCGCAATCGGTGCCTAGTCTTGAAAAGCCTGAGATCCTTGTGATTGGGACTGATGTGAGGAGTTTGTTTACTTCTTCGAGTGCGGTTTTGCTTGAAAAGGCGTTTGGGGCGAGGGAGATTACGTTGTTGAATCCGGTTTGGATTCATTCGAAGAATTCAGGGAAGCCTTTTTATGCTATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCGAGAACGGAGGATCCGGCTTTGTCAATTGCTGGAGCTGTTCATTCGCAGAAGCTTGCTGTACGGGCGATTTCTCAGTTACAATCACTGCCTGGGGGAGATATTAAACTGTTGTGTGATACTGTCGTTGAGAGTGTGAGGGAGCTTACGGGATACGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCGGAGAGTAAAAGGCCTGATTTGGAGCCGTATATTGGATTGCATTATCCTTCAACTGATATTCCGCAGGCATCGAGGTTTTTGTTTAAGCAGAATCGAGTTAGGATGATTGTGGACTGCAATGCCTCTTCGGTTCGTGTAATTCAGGATGCTGGGCTTATGCAACCTCTATGCTTAGTTGGTTCGACTCTTCGTGCTCCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCGGTTATTATCAATGGTAATGATGATGAAGCTATTGGTGGGCGGAACTCAACGAGGCTTTGGGGTTTGGTTGTTTGTCATCATACTTCTGCACGGTGTATTCCATTCCCACTGCGGTATGCATGTGAGTTCCTAATGCAAGCCTTTGGGCTTCAATTGAATATGGAATTGCAGTTAGCTTCACAGTTGTCTGAAAAGCGTGTTTTAAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCTACTGGCATTATCACACAAAGTCCTAGTATCATGGACCTAGTGAAATGTGATGGTGCAGCTCTTTATTATCAAGGGAAATATTACCCACTGGGTGTGACGCCAACTGAAGCGCAAATTAAGGATATTGTGGAGTGGTTATTGGCTTTTCATGGAGATTCAACAGGTTTAAGTACAGACAGCTTGGCTGATGCTGGGTACCCTGGGGCAGCCTTGCTTGGTGATGCTGTTTGTGGAATGGCCGTTGCTTATATCACAAAAAGGGATTTTCTGTTTTGGTTCCGATCCCACACAGCGAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCGGAGGACAAGGATGATGGTCAAAGGATGCATCCACGTTCTTCATTCAAGGCATTTTTGGAAGTGGTGAAATCCCGCAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTTCGAGATTCATTTAAGGATGCTGCCGCTTTGAATTCGAAGGCCGTTGCGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATCGATGAGCTGAGCTCAGTTGCAAGAGAAATGGTGAGGTTGATAGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGATTGCTGAGTTGACAGGGCTTGTTGTTGAGGAAGCTACGGGAAAATCCTTAATTCATGATCTTGTGCATAAAGAATCTGAAGATACAGTTGACAAACTTGTTACCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTGGAGATAAAATTGAGGTCATTCGGGCCCGAAGATCAGAAGAGGCCTATTTTTGTGGTAGTCAATGCTTGCTCTAGCAGGGACTACACAGATAATATAGTAGGCGTTTGTTTTGTTGGTCAGGATGTTACCTGCCAAAAAGTTTTCATGGACAAATTTATAAGCATACAGGGTGATTATAAGGCAATTATTCACAGTCCTAATCCTCTAATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGTTCAGAATGGAATACTGCCATGGAAAAACTCACTGGATGGTCCAGAGAAGATATAATTGGAAAAATGCTAGTCGGAGAGGTTTTTGGAAGTTGTTGTCGTCTTAAGGGCCCAGATGCATTGACAAAATTTATGATTGTTTTGCACAGTGCAATTGGAGGGCAGGACAATGACAAATTCCCTTTTTCTTTCTATGACAAGAAGGGAAAATTTGTGCAAGCTCTTTTGACAGCAAATAAGAGGATGAATATGGAGGATCAGATAGTGGGAGCCTTCTGCTTCTTACAGATACCTAGTCCTGAATTGCAGCAAACTCTTAGAATCCAGAGGCAACAGGAGAAGAACCGGTTCGTACGAATCAAAGAGTTGGCTTACATCTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGACTCATGATCAGAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATGTAGACTTGGAAAGTATTGAAGATGGTACATTGGAGCTTGAGAAGGTAGAGTTCTTATTGGGGAGTGTTATTAATGCTGTTGTTAGTCAAGTAATGATATTACTCAGAGAAAGAAACTTACAACTGATTCGAGATATACCAGAAGAAGTAAAGACTATGGCTGTTTATGGTGATCAAGTGAGGATTCAACAGGTATTGGCTGATTTCTTGCTGAATATGGTGAGATATGCACCATCTTCTGAAGGCTGGGTAGAAATACATGTCTGTCCACTCATAAAGCAAATCCCAGATGGTCCTAATCTGGCACACACTGAATTCAGGATCGTATGCCCCGGAGAAGGTCTACCTCCTGAGTTGGTTCAAGACATGTTTCATAGTGGCAGATGGGTGACACATGAAGGACTAGGCTTGAGCATGTGCAGGAAGATTCTAAAGCTCATGAATGGTGAAGTCCAATACATAAGAGAGTCTGAAAGATGTTACTTCTTGGTCACTCTTGAACTTCCCTTGACAGAGAGAGGCTTAAGCGATGTCGGTTAG 3417 43.34 MVSSNRATHSHQQQQHQQQQQAQSSNTNTSNLRSLRTDSISKAVAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGSIQPFGCVISVDEPTFRVIAYSENARELLGLTPQSVPSLEKPEILVIGTDVRSLFTSSSAVLLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVHSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASSVRVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKRVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAAALNSKAVAHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKIAELTGLVVEEATGKSLIHDLVHKESEDTVDKLVTRALKGEEDKNVEIKLRSFGPEDQKRPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNDKFPFSFYDKKGKFVQALLTANKRMNMEDQIVGAFCFLQIPSPELQQTLRIQRQQEKNRFVRIKELAYICQEVKSPLSGIRFTNSLLEATDLTHDQKQFLETSVACEKQMLKIIEDVDLESIEDGTLELEKVEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSSEGWVEIHVCPLIKQIPDGPNLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTHEGLGLSMCRKILKLMNGEVQYIRESERCYFLVTLELPLTERGLSDVG 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 41814062 41818648 - evm.model.ptg000013l.1026 HCH7g1026 548311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1026 1138 SMART HisKA_10 904 968 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g1026 1138 ProSiteProfiles Histidine kinase domain profile. 911 1131 IPR005467 -
HCH7g1026 1138 SMART pas_2 631 698 IPR000014 -
HCH7g1026 1138 SMART pas_2 762 832 IPR000014 -
HCH7g1026 1138 PANTHER OS08G0260000 PROTEIN 25 1008 - -
HCH7g1026 1138 CDD HisKA 897 960 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g1026 1138 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 236 404 IPR016132 -
HCH7g1026 1138 CDD PAS 640 747 IPR000014 -
HCH7g1026 1138 SUPERFAMILY GAF domain-like 422 599 - -
HCH7g1026 1138 CDD HATPase_Phy-like 1015 1127 IPR044767 -
HCH7g1026 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 92 206 IPR035965 -
HCH7g1026 1138 Gene3D - 886 967 - -
HCH7g1026 1138 Pfam PAS fold 763 882 IPR013767 GO:0006355(InterPro)
HCH7g1026 1138 Pfam PAS fold 632 747 IPR013767 GO:0006355(InterPro)
HCH7g1026 1138 Gene3D PAS domain 625 756 - -
HCH7g1026 1138 FunFam Phytochrome 967 1133 - -
HCH7g1026 1138 MobiDBLite consensus disorder prediction 1 32 - -
HCH7g1026 1138 Gene3D - 419 592 IPR043150 -
HCH7g1026 1138 Pfam PAS fold 87 203 IPR013654 GO:0006355(InterPro)
HCH7g1026 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 777 880 IPR035965 -
HCH7g1026 1138 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 979 1128 IPR036890 -
HCH7g1026 1138 NCBIfam PAS domain S-box protein 636 750 IPR000014 -
HCH7g1026 1138 FunFam Phytochrome 419 549 - -
HCH7g1026 1138 FunFam Phytochrome 625 757 - -
HCH7g1026 1138 SUPERFAMILY PYP-like sensor domain (PAS domain) 634 743 IPR035965 -
HCH7g1026 1138 ProSiteProfiles PAS repeat profile. 763 815 IPR000014 -
HCH7g1026 1138 ProSitePatterns Phytochrome chromophore attachment site signature. 336 345 IPR013516 -
HCH7g1026 1138 ProSiteProfiles PAS repeat profile. 629 700 IPR000014 -
HCH7g1026 1138 Pfam His Kinase A (phospho-acceptor) domain 907 968 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH7g1026 1138 CDD PAS 774 882 IPR000014 -
HCH7g1026 1138 Gene3D - 968 1133 IPR036890 -
HCH7g1026 1138 FunFam Phytochrome 776 884 - -
HCH7g1026 1138 Gene3D PAS domain 776 885 - -
HCH7g1026 1138 Gene3D PAS domain 91 339 - -
HCH7g1026 1138 SMART HKATPase_4 1016 1131 IPR003594 -
HCH7g1026 1138 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1016 1129 IPR003594 -
HCH7g1026 1138 FunFam Phytochrome 885 966 - -
HCH7g1026 1138 PIRSF Phytochrome_conventional 19 1136 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 529 548 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 336 357 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 444 464 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 651 666 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 725 742 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 745 765 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 632 648 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 151 173 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 562 580 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 PRINTS Phytochrome signature 251 270 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 SUPERFAMILY GAF domain-like 219 411 - -
HCH7g1026 1138 Pfam Phytochrome region 427 601 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
HCH7g1026 1138 Pfam GAF domain 237 414 IPR003018 GO:0005515(InterPro)
HCH7g1026 1138 Gene3D - 217 575 IPR029016 -
HCH7g1026 1138 SMART gaf_1 236 424 IPR003018 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1026 K12121 - - csv:101212197 2103.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0755 HCH-Chr3:5496339 HCH7g1026 HCH-Chr7:41814062 0.00E+00 dispersed
HCH7g1026 HCH-Chr7:41814062 HCH8g0009 HCH-Chr8:963123 0.00E+00 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42