Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1026 | ATGGTTTCTAGTAATAGGGCAACGCATTCTCATCAGCAACAGCAGCATCAGCAGCAACAACAAGCGCAATCTTCAAATACAAATACAAGCAATCTCCGATCTCTCCGTACAGATTCCATTAGCAAAGCTGTTGCTCAATACACTGCCGATGCTCGTCTCCATGCCGTTTTCGAACAATCCGGTGAGTCCGGTAAATCCTTTGATTATTCTCAGTCTATTAGAACTTCCACTCAATCCGTACCAGAACAACAAATTACTGCTTATTTGTCTAAAATTCAAAGAGGTGGTAGTATTCAGCCTTTTGGTTGTGTGATTTCTGTTGATGAACCTACTTTTCGAGTTATTGCGTATAGCGAAAACGCCCGTGAATTGCTCGGTCTCACGCCGCAATCGGTGCCTAGTCTTGAAAAGCCTGAGATCCTTGTGATTGGGACTGATGTGAGGAGTTTGTTTACTTCTTCGAGTGCGGTTTTGCTTGAAAAGGCGTTTGGGGCGAGGGAGATTACGTTGTTGAATCCGGTTTGGATTCATTCGAAGAATTCAGGGAAGCCTTTTTATGCTATTTTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCGAGAACGGAGGATCCGGCTTTGTCAATTGCTGGAGCTGTTCATTCGCAGAAGCTTGCTGTACGGGCGATTTCTCAGTTACAATCACTGCCTGGGGGAGATATTAAACTGTTGTGTGATACTGTCGTTGAGAGTGTGAGGGAGCTTACGGGATACGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCGGAGAGTAAAAGGCCTGATTTGGAGCCGTATATTGGATTGCATTATCCTTCAACTGATATTCCGCAGGCATCGAGGTTTTTGTTTAAGCAGAATCGAGTTAGGATGATTGTGGACTGCAATGCCTCTTCGGTTCGTGTAATTCAGGATGCTGGGCTTATGCAACCTCTATGCTTAGTTGGTTCGACTCTTCGTGCTCCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCGGTTATTATCAATGGTAATGATGATGAAGCTATTGGTGGGCGGAACTCAACGAGGCTTTGGGGTTTGGTTGTTTGTCATCATACTTCTGCACGGTGTATTCCATTCCCACTGCGGTATGCATGTGAGTTCCTAATGCAAGCCTTTGGGCTTCAATTGAATATGGAATTGCAGTTAGCTTCACAGTTGTCTGAAAAGCGTGTTTTAAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCTACTGGCATTATCACACAAAGTCCTAGTATCATGGACCTAGTGAAATGTGATGGTGCAGCTCTTTATTATCAAGGGAAATATTACCCACTGGGTGTGACGCCAACTGAAGCGCAAATTAAGGATATTGTGGAGTGGTTATTGGCTTTTCATGGAGATTCAACAGGTTTAAGTACAGACAGCTTGGCTGATGCTGGGTACCCTGGGGCAGCCTTGCTTGGTGATGCTGTTTGTGGAATGGCCGTTGCTTATATCACAAAAAGGGATTTTCTGTTTTGGTTCCGATCCCACACAGCGAAAGAGATCAAGTGGGGTGGTGCAAAGCATCATCCGGAGGACAAGGATGATGGTCAAAGGATGCATCCACGTTCTTCATTCAAGGCATTTTTGGAAGTGGTGAAATCCCGCAGTTTGCCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTTCGAGATTCATTTAAGGATGCTGCCGCTTTGAATTCGAAGGCCGTTGCGCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATCGATGAGCTGAGCTCAGTTGCAAGAGAAATGGTGAGGTTGATAGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGATTGCTGAGTTGACAGGGCTTGTTGTTGAGGAAGCTACGGGAAAATCCTTAATTCATGATCTTGTGCATAAAGAATCTGAAGATACAGTTGACAAACTTGTTACCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTGGAGATAAAATTGAGGTCATTCGGGCCCGAAGATCAGAAGAGGCCTATTTTTGTGGTAGTCAATGCTTGCTCTAGCAGGGACTACACAGATAATATAGTAGGCGTTTGTTTTGTTGGTCAGGATGTTACCTGCCAAAAAGTTTTCATGGACAAATTTATAAGCATACAGGGTGATTATAAGGCAATTATTCACAGTCCTAATCCTCTAATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGTTCAGAATGGAATACTGCCATGGAAAAACTCACTGGATGGTCCAGAGAAGATATAATTGGAAAAATGCTAGTCGGAGAGGTTTTTGGAAGTTGTTGTCGTCTTAAGGGCCCAGATGCATTGACAAAATTTATGATTGTTTTGCACAGTGCAATTGGAGGGCAGGACAATGACAAATTCCCTTTTTCTTTCTATGACAAGAAGGGAAAATTTGTGCAAGCTCTTTTGACAGCAAATAAGAGGATGAATATGGAGGATCAGATAGTGGGAGCCTTCTGCTTCTTACAGATACCTAGTCCTGAATTGCAGCAAACTCTTAGAATCCAGAGGCAACAGGAGAAGAACCGGTTCGTACGAATCAAAGAGTTGGCTTACATCTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGACTCATGATCAGAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATGTAGACTTGGAAAGTATTGAAGATGGTACATTGGAGCTTGAGAAGGTAGAGTTCTTATTGGGGAGTGTTATTAATGCTGTTGTTAGTCAAGTAATGATATTACTCAGAGAAAGAAACTTACAACTGATTCGAGATATACCAGAAGAAGTAAAGACTATGGCTGTTTATGGTGATCAAGTGAGGATTCAACAGGTATTGGCTGATTTCTTGCTGAATATGGTGAGATATGCACCATCTTCTGAAGGCTGGGTAGAAATACATGTCTGTCCACTCATAAAGCAAATCCCAGATGGTCCTAATCTGGCACACACTGAATTCAGGATCGTATGCCCCGGAGAAGGTCTACCTCCTGAGTTGGTTCAAGACATGTTTCATAGTGGCAGATGGGTGACACATGAAGGACTAGGCTTGAGCATGTGCAGGAAGATTCTAAAGCTCATGAATGGTGAAGTCCAATACATAAGAGAGTCTGAAAGATGTTACTTCTTGGTCACTCTTGAACTTCCCTTGACAGAGAGAGGCTTAAGCGATGTCGGTTAG | 3417 | 43.34 | MVSSNRATHSHQQQQHQQQQQAQSSNTNTSNLRSLRTDSISKAVAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGSIQPFGCVISVDEPTFRVIAYSENARELLGLTPQSVPSLEKPEILVIGTDVRSLFTSSSAVLLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVHSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASSVRVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKRVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAAALNSKAVAHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKIAELTGLVVEEATGKSLIHDLVHKESEDTVDKLVTRALKGEEDKNVEIKLRSFGPEDQKRPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNDKFPFSFYDKKGKFVQALLTANKRMNMEDQIVGAFCFLQIPSPELQQTLRIQRQQEKNRFVRIKELAYICQEVKSPLSGIRFTNSLLEATDLTHDQKQFLETSVACEKQMLKIIEDVDLESIEDGTLELEKVEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSSEGWVEIHVCPLIKQIPDGPNLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTHEGLGLSMCRKILKLMNGEVQYIRESERCYFLVTLELPLTERGLSDVG | 1138 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 41814062 | 41818648 | - | evm.model.ptg000013l.1026 | HCH7g1026 | 548311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1026 | 1138 | SMART | HisKA_10 | 904 | 968 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH7g1026 | 1138 | ProSiteProfiles | Histidine kinase domain profile. | 911 | 1131 | IPR005467 | - | |
| HCH7g1026 | 1138 | SMART | pas_2 | 631 | 698 | IPR000014 | - | |
| HCH7g1026 | 1138 | SMART | pas_2 | 762 | 832 | IPR000014 | - | |
| HCH7g1026 | 1138 | PANTHER | OS08G0260000 PROTEIN | 25 | 1008 | - | - | |
| HCH7g1026 | 1138 | CDD | HisKA | 897 | 960 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH7g1026 | 1138 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 236 | 404 | IPR016132 | - | |
| HCH7g1026 | 1138 | CDD | PAS | 640 | 747 | IPR000014 | - | |
| HCH7g1026 | 1138 | SUPERFAMILY | GAF domain-like | 422 | 599 | - | - | |
| HCH7g1026 | 1138 | CDD | HATPase_Phy-like | 1015 | 1127 | IPR044767 | - | |
| HCH7g1026 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 92 | 206 | IPR035965 | - | |
| HCH7g1026 | 1138 | Gene3D | - | 886 | 967 | - | - | |
| HCH7g1026 | 1138 | Pfam | PAS fold | 763 | 882 | IPR013767 | GO:0006355(InterPro) | |
| HCH7g1026 | 1138 | Pfam | PAS fold | 632 | 747 | IPR013767 | GO:0006355(InterPro) | |
| HCH7g1026 | 1138 | Gene3D | PAS domain | 625 | 756 | - | - | |
| HCH7g1026 | 1138 | FunFam | Phytochrome | 967 | 1133 | - | - | |
| HCH7g1026 | 1138 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| HCH7g1026 | 1138 | Gene3D | - | 419 | 592 | IPR043150 | - | |
| HCH7g1026 | 1138 | Pfam | PAS fold | 87 | 203 | IPR013654 | GO:0006355(InterPro) | |
| HCH7g1026 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 777 | 880 | IPR035965 | - | |
| HCH7g1026 | 1138 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 979 | 1128 | IPR036890 | - | |
| HCH7g1026 | 1138 | NCBIfam | PAS domain S-box protein | 636 | 750 | IPR000014 | - | |
| HCH7g1026 | 1138 | FunFam | Phytochrome | 419 | 549 | - | - | |
| HCH7g1026 | 1138 | FunFam | Phytochrome | 625 | 757 | - | - | |
| HCH7g1026 | 1138 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 634 | 743 | IPR035965 | - | |
| HCH7g1026 | 1138 | ProSiteProfiles | PAS repeat profile. | 763 | 815 | IPR000014 | - | |
| HCH7g1026 | 1138 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 336 | 345 | IPR013516 | - | |
| HCH7g1026 | 1138 | ProSiteProfiles | PAS repeat profile. | 629 | 700 | IPR000014 | - | |
| HCH7g1026 | 1138 | Pfam | His Kinase A (phospho-acceptor) domain | 907 | 968 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| HCH7g1026 | 1138 | CDD | PAS | 774 | 882 | IPR000014 | - | |
| HCH7g1026 | 1138 | Gene3D | - | 968 | 1133 | IPR036890 | - | |
| HCH7g1026 | 1138 | FunFam | Phytochrome | 776 | 884 | - | - | |
| HCH7g1026 | 1138 | Gene3D | PAS domain | 776 | 885 | - | - | |
| HCH7g1026 | 1138 | Gene3D | PAS domain | 91 | 339 | - | - | |
| HCH7g1026 | 1138 | SMART | HKATPase_4 | 1016 | 1131 | IPR003594 | - | |
| HCH7g1026 | 1138 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1016 | 1129 | IPR003594 | - | |
| HCH7g1026 | 1138 | FunFam | Phytochrome | 885 | 966 | - | - | |
| HCH7g1026 | 1138 | PIRSF | Phytochrome_conventional | 19 | 1136 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 529 | 548 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 336 | 357 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 444 | 464 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 651 | 666 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 725 | 742 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 745 | 765 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 632 | 648 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 151 | 173 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 562 | 580 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | PRINTS | Phytochrome signature | 251 | 270 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | SUPERFAMILY | GAF domain-like | 219 | 411 | - | - | |
| HCH7g1026 | 1138 | Pfam | Phytochrome region | 427 | 601 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| HCH7g1026 | 1138 | Pfam | GAF domain | 237 | 414 | IPR003018 | GO:0005515(InterPro) | |
| HCH7g1026 | 1138 | Gene3D | - | 217 | 575 | IPR029016 | - | |
| HCH7g1026 | 1138 | SMART | gaf_1 | 236 | 424 | IPR003018 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0755 | HCH-Chr3:5496339 | HCH7g1026 | HCH-Chr7:41814062 | 0.00E+00 | dispersed | |
| HCH7g1026 | HCH-Chr7:41814062 | HCH8g0009 | HCH-Chr8:963123 | 0.00E+00 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g1026 | K12121 | - | csv:101212197 | 2103.18 |