Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1048 ATGTCGACGGCGAGTTCGAGTAATGTTAGGAAAGGTGGTGAAGCTGTCCCTGACCAGTTTCCGGTTGGTCTTCGTGTTCTTGTTGTGGATGATGATCCGACATGTCTTATGATCTTGGAGAAGATGCTTCTTATTTGTCGTTATGATGTAACAAAATGTAGTCAAGCTGAGGATGCTCTGTCTCTTCTTAGACGGTACAAAAACAGGTTTGATATTGTTTTAAGTGACGTCCATATGCCGGATATGGACGGATTCAAACTCCTTGAGTACATTGGGCTGGAAATGGACTTGCCTGTAATCATGATGTCGGTAGATGACGGGAAAGATGTTGTCATGAAGGGAGTGACTCATGGGGCTTGTGACTATCTAATAAAACCAGTTCGGATTGAAGCGTTGAAGAACATATGGCAGCACGTTGTTCGCAGGAGGAAAAATGAGTGGAAAGACTTGGAGCAATCTGGATGTGTGGATGATGTAGATCGGCAGCAAAAGACAACTGAAGATGCGGATTATTCGTCATCTGCAAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATGCGGAAGAGAGGGATGATTCATCAACCCTAAAGAAACCTCGGGTGGTTTGGTCTGTTGAGCTTCATCAGCAGTTTGTGGCAGCTGTTAATCAACTAGGGATTGATAAGGCTGTTCCCAAAAAAATTCTGGAGTTGATGAATGTACCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAAAAATATCGCCTCTATCTGAGAAGGCTAAGTGGAATCACACAACACCAGAGTAATTTAAACAATACTTTCATGAGCGCCCAGGAAGCAACATTTGGGCCAATGTCTTCACTAAATGGGATTGATCTTCAAACGCTTGCTGCTGCTGGTCAACTCCAGCCACAGAGTCTCGCTACACTACAAGCAGCTGGATTTGGTAGGCCTACAGCGAAGTCAGGCATACCTATGCCTCTTGTTGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTTGGTGATGGGCAGCAGCAACATTTGAACAGTAGTAAACCAGTGAATTTACTTCATGGAATTCCGACAACTATGGAGCCGAAACAGCTTGCTAGTTTGCAACATTCTGCTCAATCTCATGGGAACATATCAATGCAAGTTAGTGCTCAAGGAGGCCAAAGTAGCTCTCAATCAGTGCAGACGCCTCCACCCCAAGCAAGAGGGCAGATTCTCAATGAAAGTACTTCGAATAATGTTACTAGGTTCCCACCAACCATACAACAGTCTATTTTAGCAAATGGCACTGCTGCTGGGGTTTTGGCACGAACTGAATTTGTTAATAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAACCTCTTCTATTTTAAATTTTCCCATGAACCAAAATGCAGAATTGCCTGGTAATAGTTTTCCTCTTCAAAGTCCTTCAGGTATGTCAAGTATTGTACTTAAGGGAAGATTCCCAGATGAGGTTAACTCAGATATCAAAGGATCTGAAGGTTTTGTGCCAAGCTATGATATTTTTAGGGATCTGCATACCCAGAAAACCCAAGATTGGGACTTGCAAAATGTGGGTGCGACCTTTGATGCCTCCCGACAAGCGAACACCATACAGGGTAGTCTTGGTGTTCCACCCTCAGGTTTTGGTCATCAAGGGTATTCCTCTAGCCAACAAAATGGACATAACAGGAATACATCCACTGCAGGCAAGGCCGTGTTCTTGTTGGAAGAAGGAACTAACAATGGGAATGCACAAAATATGGGTCAACAGCTCAATTCTCTTATTGTTGACAATTCAGTGAGAGTTAAATCTGAAAGAGTTCCAGATTCAAGCTGTCAAACCGAGCTTTTTCCGGAGCACTTTGGTCAGGAGGATCTAATGAGTGCCCTTCTGAAGCAGCAGCAAGGAGGCATTGGACAACCTGAAAGTGAGTTGGAATGGGTATTCCATGGATAA 2001 43.73 MSTASSSNVRKGGEAVPDQFPVGLRVLVVDDDPTCLMILEKMLLICRYDVTKCSQAEDALSLLRRYKNRFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKDVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNEWKDLEQSGCVDDVDRQQKTTEDADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQEATFGPMSSLNGIDLQTLAAAGQLQPQSLATLQAAGFGRPTAKSGIPMPLVDQRNHIFSFENPKLRFGDGQQQHLNSSKPVNLLHGIPTTMEPKQLASLQHSAQSHGNISMQVSAQGGQSSSQSVQTPPPQARGQILNESTSNNVTRFPPTIQQSILANGTAAGVLARTEFVNNSRGGGYNLVSPTSSILNFPMNQNAELPGNSFPLQSPSGMSSIVLKGRFPDEVNSDIKGSEGFVPSYDIFRDLHTQKTQDWDLQNVGATFDASRQANTIQGSLGVPPSGFGHQGYSSSQQNGHNRNTSTAGKAVFLLEEGTNNGNAQNMGQQLNSLIVDNSVRVKSERVPDSSCQTELFPEHFGQEDLMSALLKQQQGGIGQPESELEWVFHG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42435263 42438533 - evm.model.ptg000013l.1048 HCH7g1048 548333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1048 666 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
HCH7g1048 666 SUPERFAMILY CheY-like 23 147 IPR011006 -
HCH7g1048 666 Gene3D - 201 263 - -
HCH7g1048 666 MobiDBLite consensus disorder prediction 180 201 - -
HCH7g1048 666 CDD REC_typeB_ARR-like 26 140 - -
HCH7g1048 666 FunFam Two-component response regulator 24 161 - -
HCH7g1048 666 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
HCH7g1048 666 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
HCH7g1048 666 PIRSF RR_ARR_type-B 5 660 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH7g1048 666 MobiDBLite consensus disorder prediction 552 580 - -
HCH7g1048 666 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
HCH7g1048 666 MobiDBLite consensus disorder prediction 392 414 - -
HCH7g1048 666 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
HCH7g1048 666 MobiDBLite consensus disorder prediction 158 201 - -
HCH7g1048 666 MobiDBLite consensus disorder prediction 564 580 - -
HCH7g1048 666 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 335 IPR045279 GO:0009736(InterPro)
HCH7g1048 666 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
HCH7g1048 666 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
HCH7g1048 666 Gene3D - 24 156 - -
HCH7g1048 666 FunFam Two-component response regulator 200 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1114 HCH-Chr1:58745098 HCH7g1048 HCH-Chr7:42435263 6.50E-76 dispersed
HCH4g0079 HCH-Chr4:431322 HCH7g1048 HCH-Chr7:42435263 1.90E-78 dispersed
HCH6g1354 HCH-Chr6:47559200 HCH7g1048 HCH-Chr7:42435263 6.40E-45 dispersed
HCH7g1048 HCH-Chr7:42435263 HCH8g0917 HCH-Chr8:45479988 8.40E-86 dispersed
HCH13g1166 HCH-Chr13:38246718 HCH7g1048 HCH-Chr7:42435263 3.10E-41 transposed
HCH4g1050 HCH-Chr4:6771679 HCH7g1048 HCH-Chr7:42435263 4.20E-14 wgd
HCH6g1728 HCH-Chr6:49883382 HCH7g1048 HCH-Chr7:42435263 1.10E-228 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33896 PF00072 Response_reg 8.10E-22 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1048 K14491 - csv:101209013 1095.49