Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1060 ATGACAAATGGAGGGTACGAGAATATTGGCGATGGAGGCAAGAAGAAGAAGGCTGCCATTATAGGCATCTCTTCTTTGTTTCTTGTTGCCATGGTAGTTGCGGTGGCTGTCGGTGTCAACCATCGAGGGAATAATGGTGATGCCGCTGCTCCGGCCGAGATCGCCACCACCTCGAAGGCGATCAAGGCTATTTGTCAGCCCACTGATTACAAAGAAACGTGTGAGAAAACCCTCACGCAAGCGGCCGGTAACGCTACCGACCCCAAGGACTTGATCAAGGCTTGTTTTCATGTTGCTGTCCAGGATTTGAAATCCGCAATTGGCAACTCCACCGCCTTGAGCGAGGCTGCCAAGGACCCGATGGTCAAGCAGGCGCTCGAGAACTGTCGTGAGCTGATCGATTACGCTATCGATGATCTCTTGACATCTTTCGACAAAATTACCGATAACTTTGATTTCGCCAACCTCGATGATTACGTCGAGGATCTTAAGGTTTGGCTCAGCGGTGCCTTGACATATCAAGATACTTGCTTGGATGGGTTCGAGAACACGACGGGCGATGCGGGGGAGAAAATGAAGAAGTTATTGAATACAACGCAGCAATTGACAAGTAATGGTATCGCGATGGTTAGTGAAGTTACCTCCATCATGAGTTCACTTGGACTTGCATCGGCTGGGAGACGGCTGCTCTCAGAGGAGCCATCGTGGGTGAATGATAGACGAGGGCTCCTCCAAGCAACCCCGGGAAACATAAAGCCTGATGTGGTGGTGGCCCAGGATGGAAGTGGAAAATATAAAACAATAAATGAAGCTTTAAAAGATATCCCAAAGAAAAGCAATAAGACGTTTGTGATTTATATAAAAGCTGGTATTTATAAGGAGCAAGTGATCGTTGATAAGAGCATGACTCATGTTATGATGATTGGAGATGGCCCAACCAAGACTAAGATCACAGAAGGCAAGAACTTCATCGATGGAATCCAAACATTCAAGACTGCCACATTTTCGGTGGTTGGAAGCAACTTCATTGCGAAAGACATTGGATTCGAGAACTCTGCGGGAGCCCATAAGCACCAAGCAGTGGCCCTCCGAGTGCAATCAGACATGTCAATCTTTTACAATTGTCAAATGGATGGTTATCAAGACACCCTTTACACACACGCCCATCGACAATTCTATCGGGATTGCACGATCAGCGGCACCATCGATTTCATATTCGGTAACGCAGCGGCGGTGTTCCAGAACTGCAAGATAGTAGTGAGGAAGCCATTAGACAATCAACAATGTATCATCACGGCTCAGGGAAGACTGGAGAAGCGTGAACCAACAGCCATTATCCTTCAAAACTGCGTAATAACGACCGATCCCGCATACCTTCCGTTGAAGGATAAAAACAAGGCTTATCTTGGAAGGCCATGGAAGCAATACTCAAGGACCATAATTATGCAATCTCAGATTGATGGCTTTATTCAGCCAGAGGGATGGTTGCCATGGATGGGTGATTTTGCTCTCAACACATTGTTTTACACCGAGATTCAGAATAGGGGACCGGGTTCCGTCCAGACTCACCGGGTTAAATGGAGAGGAATCAAGCAGATTACTCCACAGCACGCCGTCGATTTCACTCCAGGAAGGTTCATTCGCGGTGATCCGTGGATCAAACCCACCGGAGTTCCGTACACTTCCGGCATGATGGCTATGTAA 1704 47.54 MTNGGYENIGDGGKKKKAAIIGISSLFLVAMVVAVAVGVNHRGNNGDAAAPAEIATTSKAIKAICQPTDYKETCEKTLTQAAGNATDPKDLIKACFHVAVQDLKSAIGNSTALSEAAKDPMVKQALENCRELIDYAIDDLLTSFDKITDNFDFANLDDYVEDLKVWLSGALTYQDTCLDGFENTTGDAGEKMKKLLNTTQQLTSNGIAMVSEVTSIMSSLGLASAGRRLLSEEPSWVNDRRGLLQATPGNIKPDVVVAQDGSGKYKTINEALKDIPKKSNKTFVIYIKAGIYKEQVIVDKSMTHVMMIGDGPTKTKITEGKNFIDGIQTFKTATFSVVGSNFIAKDIGFENSAGAHKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTISGTIDFIFGNAAAVFQNCKIVVRKPLDNQQCIITAQGRLEKREPTAIILQNCVITTDPAYLPLKDKNKAYLGRPWKQYSRTIIMQSQIDGFIQPEGWLPWMGDFALNTLFYTEIQNRGPGSVQTHRVKWRGIKQITPQHAVDFTPGRFIRGDPWIKPTGVPYTSGMMAM 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 42694465 42696252 + evm.model.ptg000013l.1060 HCH7g1060 548345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1060 567 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
HCH7g1060 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
HCH7g1060 567 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857(InterPro)
HCH7g1060 567 CDD PMEI-like_3 63 215 - -
HCH7g1060 567 FunFam Pectinesterase 248 564 - -
HCH7g1060 567 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857(InterPro)
HCH7g1060 567 Gene3D - 248 564 IPR012334 -
HCH7g1060 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 213 IPR035513 -
HCH7g1060 567 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
HCH7g1060 567 Pfam Pectinesterase 254 550 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH7g1060 567 PANTHER PECTINESTERASE 17 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH7g1060 567 FunFam Pectinesterase 57 214 - -
HCH7g1060 567 SMART PMEI_2 56 209 IPR006501 GO:0004857(InterPro)
HCH7g1060 567 SUPERFAMILY Pectin lyase-like 252 563 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0034 HCH-Chr6:485787 HCH7g1060 HCH-Chr7:42694465 4.80E-109 dispersed
HCH7g1060 HCH-Chr7:42694465 HCH8g0082 HCH-Chr8:3958147 6.90E-198 dispersed
HCH7g1060 HCH-Chr7:42694465 HCH7g1061 HCH-Chr7:42705628 0.00E+00 tandem
HCH4g1042 HCH-Chr4:6698670 HCH7g1060 HCH-Chr7:42694465 2.00E-104 wgd
HCH6g1710 HCH-Chr6:49794629 HCH7g1060 HCH-Chr7:42694465 1.80E-230 wgd
HCH7g1060 HCH-Chr7:42694465 HCH8g0081 HCH-Chr8:3954616 3.80E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1060 K01051 - csv:101212686 858.211