Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1094 ATGCTGCATGAAACTTCAACAATCCCTGAGGGAGAACTTGAGGTTAGCTTTGGTTATCAATGCAATGACAACAGAGAGGTTGTTTATGACGTCTCTGATAAGTTCAAGATCCAGCCTGAACTTCGAAGGATCAGTAGTTTCTCTTGCTTATCTGGGGCTGCCTTGAGTGCAAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTAATAGGAGAAGAAATACTTCCCAGCTGGGACTCTCCCAACTCCTTCCGTAAGATTCCATCATCACCTTCTCTTTCGAGGTTGGATATCCTGTCGTCGTCTCTGCAGAGTAGTCTATCAAACTTAAGTTGCAGTCCATCCACCCCAACATCTGATTATGATTCATACTTGTTAAAATCCATGAGTGATCCTTCTAGAAGTGAAGGTTTTCTTAATGTTAAAGAAGTGCAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGGGTTCAAGCCGTTTGTTCTGAAGAAAAAGGGTGGCTCTTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTATATGAAACCATCGTATTTTATTTGAATTTAATAGATTGGGAAGCTACGCAAGGAGCCTCTGACAGTTTGGACATGGGTAATTCACATTATCTTGATGGCAATAATATTACTCATGGAAGATTCTCTCCTCTAAGAAACAATAGTCAAATCGATTCCGATATCGGTAATGTCTTCGAGAACCATTCACATGCTAAAGCAGGAAGGTCAAGTCATCCTCTAAGGCATGGAGTGCTTGATAGCCTCCAGCGTGCTCTTAGTCAGGCGGAGAATGATTTTCTGCACATGGTTGAACAAGAAATGGAGGACCGCCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTGCTTCTTCATGGAAAGGATTTGTATACGCTAAATTTAGGTGATAGTAGAGCAGTAATAGCTACCACCCATGATACTGATATACAAGGAAATAGAGGACTGAAAGCTGTGCAGCTCACTGATAGTCATACTGTGGATAATGAACTTGAAAGAGCACAATTACTACATAATCATCCTGATGATCCCTCTATTATTGTTGGTGGGAAAGTCAAAGGAAAACTCAAAGTCACTCGTGCTCTTGGAGTTGGCTACTTGAAGACGAAAAAGTTAAACGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTGATAAGCCCTCCCTATATTTCCACTCAACCGGGGGTGTCTGTCCATAGAATATCCAAGTCAGATTGCTTTGTTATAATTGGTAGTGATGGTTTATTTGACTTTTTTGGAAATGACGAGGCAGTGAATCTTGTCCATTCATATATCTTGAGCAATCCATCCGGTGATCCTGCGAAGTACTTATTGGAGCAGCTCTTACTGAAAGCTGCTGATTGTGCAGGTTTTAGCAAGGAAGAGTTAATTACAATTCCAGCCGGCAGGAGAAGGAAATATCACGACGATGTAACCGTCATTGTAATCATCCTCGGAACAAACCAGCGCACCACAAAGGCATCTACTAGCTTGTAA 1566 41.57 MLHETSTIPEGELEVSFGYQCNDNREVVYDVSDKFKIQPELRRISSFSCLSGAALSANATLANTNICNGLIGEEILPSWDSPNSFRKIPSSPSLSRLDILSSSLQSSLSNLSCSPSTPTSDYDSYLLKSMSDPSRSEGFLNVKEVQVAGGAAGEDRVQAVCSEEKGWLFCAIYDGFNGRDAADFLAGTLYETIVFYLNLIDWEATQGASDSLDMGNSHYLDGNNITHGRFSPLRNNSQIDSDIGNVFENHSHAKAGRSSHPLRHGVLDSLQRALSQAENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVIATTHDTDIQGNRGLKAVQLTDSHTVDNELERAQLLHNHPDDPSIIVGGKVKGKLKVTRALGVGYLKTKKLNDALMGILRVRNLISPPYISTQPGVSVHRISKSDCFVIIGSDGLFDFFGNDEAVNLVHSYILSNPSGDPAKYLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTKASTSL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43516206 43519047 + evm.model.ptg000013l.1094 HCH7g1094 548379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1094 521 SMART PP2C_4 130 506 IPR001932 -
HCH7g1094 521 CDD PP2Cc 152 508 IPR001932 -
HCH7g1094 521 ProSiteProfiles PPM-type phosphatase domain profile. 139 508 IPR001932 -
HCH7g1094 521 Pfam Protein phosphatase 2C 236 459 IPR001932 -
HCH7g1094 521 SUPERFAMILY PP2C-like 153 509 IPR036457 -
HCH7g1094 521 Gene3D - 120 518 IPR036457 -
HCH7g1094 521 Coils Coil 267 287 - -
HCH7g1094 521 PANTHER PROTEIN PHOSPHATASE 2C 148 506 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1087 HCH-Chr2:53786056 HCH7g1094 HCH-Chr7:43516206 1.60E-58 dispersed
HCH7g1094 HCH-Chr7:43516206 HCH11g1331 HCH-Chr11:45244950 8.80E-06 dispersed
HCH7g1094 HCH-Chr7:43516206 HCH9g0672 HCH-Chr9:4456440 1.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1094 - - - 0.0