Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1110 | ATGAACCCGTACGGTCACTCTATGGAAGGGTTAAACTCCGATCCATCGCCGGAATGGACGGCTCCTGGACCGGATACCGGTCATGGAGAGGCTCTATGGACATTAGGAATGGGATCGAGAGATAGAGAATCGTATCCCGAACGCCCGGAGGAAGCTGATTGTATATATTATTTACGTACTGGATTTTGTGGCTATGGTTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGAAGCTCGGTTTTAGGAGCTTCGAGGCATGGTGGAAGAGAGTATCCCGAACGGATAGGGCAGCCTGTATGTCAGTATTATATGAGGACAGGAATGTGCAGATTTGGTGCTTCGTGTAAGTATCACCATCCGCAGCTGGAAAAAGGTTCTCTTAGCCCTGTGTTACTGAATTTCTACGGATACCCATTACGGCCGGGTGAAAAGGAGTGTTCCTATTATGTGAAAAACGGGCAGTGCAAGTTTGCTGCAACGTGCAAATTTCATCATCCAGAACCGGCTGGATTGCAGTTTCCAGCGCCATCACCATCAGTCCAAGTTGCACCAGTACCAGCTCCAGTGCCCGGACCCTCTGTTTATCCTCCTGTGCAGTCCCCATCTGCTCATTCGTCACAACAGTATGGAGTAATACTTGCAAGGCCTTCATTGCTCCCAAGCTCATATGTTCACAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTCCAATTTCCGAATTGGAGTCCTTACCCAGCACCCATGAGTCCTGTGGCCTCACCTGGTACTCAACCTGCCGTTGGATCAGGGCCTATTTATGGTATGGCACAAGTTTCTCCTTCTGCTTCTGCCTATGCAGGATCTTATCAGCCAGTGCCATCTGCCGGTCCCTCAAGTTCTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAGTTTTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCTCCCGAATTGACTTCTTCGAGAACAAATGTTGTCCTTAGCCAACTAGGTCTGCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATATGTAAGTTCGGCCCTGCATGCAAATTTGACCACTCAATGGAAGGACTTAGTTACAGTCCATCTGCATCATCTCTTGCCGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGTTGGTACTTTGGCCCCATCATCTTCATCTTCAGAGTTGAGGCCTGAACTTTTTTCCGGATCAAGGAAGGATTCCCACTCTTCAAGAATGTCATCAATGAGCACTTCTAGTGGATTGGTTGGTCCAACTACGTTGAGGACAGAAATCCATTCTCATTCAAGTGTTCAACGGTCTTCCCAAAGTTCTGGCCCTTCAGTGAACAGCTCCACCAGCACGACCAGTGTGGAGGGTCGTAGTTGA | 1449 | 49.0 | MNPYGHSMEGLNSDPSPEWTAPGPDTGHGEALWTLGMGSRDRESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSSVLGASRHGGREYPERIGQPVCQYYMRTGMCRFGASCKYHHPQLEKGSLSPVLLNFYGYPLRPGEKECSYYVKNGQCKFAATCKFHHPEPAGLQFPAPSPSVQVAPVPAPVPGPSVYPPVQSPSAHSSQQYGVILARPSLLPSSYVHSPYGPMLVSPGVVQFPNWSPYPAPMSPVASPGTQPAVGSGPIYGMAQVSPSASAYAGSYQPVPSAGPSSSSQKEHSFPERPGQPECQFYMRTGDCKFGSSCRYHHPPELTSSRTNVVLSQLGLPLRPGAPPCTHFMQRGICKFGPACKFDHSMEGLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPELFSGSRKDSHSSRMSSMSTSSGLVGPTTLRTEIHSHSSVQRSSQSSGPSVNSSTSTTSVEGRS | 482 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 43765982 | 43769404 | + | evm.model.ptg000013l.1110 | HCH7g1110 | 548395 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1110 | 482 | SUPERFAMILY | CCCH zinc finger | 142 | 168 | IPR036855 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 94 | 122 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | PANTHER | PROTEIN PHOSPHATASE RELATED | 40 | 379 | IPR050974 | GO:0003729(PANTHER) | |
| HCH7g1110 | 482 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| HCH7g1110 | 482 | Gene3D | - | 294 | 380 | - | - | |
| HCH7g1110 | 482 | SMART | c3hfinal6 | 351 | 378 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SMART | c3hfinal6 | 94 | 121 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SMART | c3hfinal6 | 140 | 167 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SMART | c3hfinal6 | 48 | 75 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SMART | c3hfinal6 | 305 | 332 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | MobiDBLite | consensus disorder prediction | 284 | 308 | - | - | |
| HCH7g1110 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 48 | 76 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 351 | 379 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SUPERFAMILY | CCCH zinc finger | 96 | 123 | IPR036855 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Gene3D | - | 126 | 173 | - | - | |
| HCH7g1110 | 482 | MobiDBLite | consensus disorder prediction | 407 | 482 | - | - | |
| HCH7g1110 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 75 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 353 | 378 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 97 | 121 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 142 | 167 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 306 | 332 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SUPERFAMILY | CCCH zinc finger | 50 | 77 | IPR036855 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SUPERFAMILY | CCCH zinc finger | 355 | 381 | IPR036855 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | SUPERFAMILY | CCCH zinc finger | 309 | 332 | IPR036855 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | Gene3D | - | 44 | 125 | - | - | |
| HCH7g1110 | 482 | MobiDBLite | consensus disorder prediction | 284 | 302 | - | - | |
| HCH7g1110 | 482 | ProSiteProfiles | Zinc finger C3H1-type profile. | 305 | 333 | IPR000571 | GO:0046872(InterPro) | |
| HCH7g1110 | 482 | MobiDBLite | consensus disorder prediction | 427 | 482 | - | - | |
| HCH7g1110 | 482 | FunFam | CCCH type zinc finger protein | 303 | 388 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g0877 | HCH-Chr2:52341019 | HCH7g1110 | HCH-Chr7:43765982 | 4.60E-16 | transposed | |
| HCH3g0402 | HCH-Chr3:2620529 | HCH7g1110 | HCH-Chr7:43765982 | 2.30E-13 | transposed | |
| HCH7g0009 | HCH-Chr7:61916 | HCH7g1110 | HCH-Chr7:43765982 | 1.30E-14 | transposed | |
| HCH8g0268 | HCH-Chr8:14505171 | HCH7g1110 | HCH-Chr7:43765982 | 3.00E-25 | transposed | |
| HCH6g1674 | HCH-Chr6:49580153 | HCH7g1110 | HCH-Chr7:43765982 | 5.10E-93 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33901 | PF00642 | zf-CCCH | 4.80E-09 | CL0537 | HCH | TF |
Pathway information