Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1120 ATGGGTGGGTGTTTCCCTTGTTTTGGATCATCTGATGATGATGGTAATGGTGTAAAAGAAGTTTCTAGGAAGGATTCAGCTAAGGATGGCTCCACTCCTCACTCTCATAATGTTACTAGAGTTAGCTCAGATAAATCAAAGTCGCGGAGTGTATCTGATGCTAAGAAGGAACCGGCAGTTCAAAATGATGGAACAAAAGCACATATTGCAGCCCAAACATTTACGTTTCGGGAGCTTGCTACAGCTACAAAGAATTTTAGGCCCGAATGTTTACTGGGAGAAGGAGGGTTTGGAAGGGTTTACAAGGGTCGCTTAGAGAGCACGGGACAGGTGGTGGCCGTGAAGCAGCTTGATCGTAATGGCCTTCAAGGCAATCGAGAATTTTTGGTGGAGGTCCTAATGCTTAGCCTGTTACATCACCCAAATCTCGTGAACTTGATAGGTTATTGTGCTGACGGGGATCAACGGCTTCTAGTTTATGAATTCATGCCTCTTGGATCCTTGGAAGATCATTTGCATGATCTTCCACCAGATAAGGAGACCTTGGATTGGAATACTAGAATGAAAATCGCAGCTGGTGCAGCGAAGGGATTGGAATATTTGCATGATAAAGCAAACCCCCCTGTTATATATAGAGACTTGAAGTCTTCAAACATTCTTCTTGATGAGGGCTACCACCCTAAGCTGTCAGATTTTGGTCTTGCCAAACTGGGTCCGGTTGGTGATAAGACTCATGTCTCAACGAGAGTGATGGGAACATATGGTTATTGTGCTCCGGAGTATGCTATGACCGGTCAACTCACTCTCAAGTCCGATGTATATAGTTTTGGAGTTGTCTTTCTAGAACTTATCACAGGCCGCAAGGCAATTGATAATACACGAGGTCCAGGGGAGCATAATCTTGTTGCATGGGCTCGGCCGCTTTTTAAAGATCGTAGGAAGTTCCCTAAGATGGCTGACCCACTGCTGCAAGGCCGTTATCCTATGCGGGGACTTTATCAGGCTTTGGCAGTTGCAGCAATGTGCTTGCAGGAACAGGCTGCTACGAGACCTCTAATTGGGGACGTTGTTACTGCTCTGTCATATTTAGCTTCCCAAACATATGATCCTAATGCAGCTGCTTCTCAAAGTAATCGAATGGGTGGATCTACTCCACGATCCCGAGATGACAGGAGAGGTTTACCAGATGGATTGGACAGCCCCGATGAGCGTGGCCGTGGGCGACATGGGTCCCCATCACAATACAAAAATTCACCTGATTATAGAAAGAGAGACCTCCAAAGGGAATTGGGTATCGGTACAGAACTGAGCAAAACTGACTCTGGAGGTGGATCTGGTAGAAAGTGGGGCTTGGATGAGTTAGAAAGACAAGAATCTTTGCGAGACAGTCCTGTAAATACCGGGAGAGCAAGAGAAACACCCAGGAACCGCGATCTAAACAGAGAACGTGCGGTGGCAGAGGCAAGAGTGTGGGGTGAAAACTGGAGAGAGAGAAAGCGGGCAAACGCACAAGGTAGCTTCGATGGTTCACAAGAATAG 1539 46.59 MGGCFPCFGSSDDDGNGVKEVSRKDSAKDGSTPHSHNVTRVSSDKSKSRSVSDAKKEPAVQNDGTKAHIAAQTFTFRELATATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKETLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALSYLASQTYDPNAAASQSNRMGGSTPRSRDDRRGLPDGLDSPDERGRGRHGSPSQYKNSPDYRKRDLQRELGIGTELSKTDSGGGSGRKWGLDELERQESLRDSPVNTGRARETPRNRDLNRERAVAEARVWGENWRERKRANAQGSFDGSQE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 43960087 43964858 + evm.model.ptg000013l.1120 HCH7g1120 548405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1120 512 MobiDBLite consensus disorder prediction 372 483 - -
HCH7g1120 512 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
HCH7g1120 512 SMART serkin_6 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1120 512 SUPERFAMILY Protein kinase-like (PK-like) 69 360 IPR011009 -
HCH7g1120 512 MobiDBLite consensus disorder prediction 1 64 - -
HCH7g1120 512 MobiDBLite consensus disorder prediction 384 410 - -
HCH7g1120 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1120 512 Gene3D Phosphorylase Kinase; domain 1 57 162 - -
HCH7g1120 512 PANTHER OS07G0668900 PROTEIN 44 379 - -
HCH7g1120 512 Pfam Protein kinase domain 91 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1120 512 CDD STKc_IRAK 92 360 - -
HCH7g1120 512 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
HCH7g1120 512 MobiDBLite consensus disorder prediction 40 62 - -
HCH7g1120 512 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
HCH7g1120 512 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1120 512 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
HCH7g1120 512 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0239 HCH-Chr11:2172097 HCH7g1120 HCH-Chr7:43960087 5.80E-151 dispersed
HCH2g1138 HCH-Chr2:54046726 HCH7g1120 HCH-Chr7:43960087 6.50E-128 dispersed
HCH4g0852 HCH-Chr4:5449072 HCH7g1120 HCH-Chr7:43960087 5.40E-133 dispersed
HCH5g0986 HCH-Chr5:9436975 HCH7g1120 HCH-Chr7:43960087 3.00E-140 dispersed
HCH7g1120 HCH-Chr7:43960087 HCH9g0201 HCH-Chr9:1180602 1.90E-98 dispersed
HCH10g0089 HCH-Chr10:834036 HCH7g1120 HCH-Chr7:43960087 4.00E-180 transposed
HCH4g0001 HCH-Chr4:34203 HCH7g1120 HCH-Chr7:43960087 2.50E-76 transposed
HCH6g0781 HCH-Chr6:42595380 HCH7g1120 HCH-Chr7:43960087 8.00E-140 transposed
HCH8g0231 HCH-Chr8:10383003 HCH7g1120 HCH-Chr7:43960087 2.50E-126 transposed
HCH6g1669 HCH-Chr6:49554733 HCH7g1120 HCH-Chr7:43960087 5.00E-232 wgd
HCH7g1120 HCH-Chr7:43960087 HCH8g0133 HCH-Chr8:5392505 4.00E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81648 PF00069 Pkinase 5.30E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1120 - - - 0.0