Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1131 ATGGGGTGTGTTTTTGGGAAACAGGTATCTGGTAAGCCTGTTGAGAGAGAGGAAGGGAAGGAGGAGAGAGAAGAGGAGGGGGAGGAGGAGAGAGAGAAGGAAGTTAGGGCTTCTGGGAAAGCTGAAGTTGCTAACAATGGTGGCAATAGGATTAGGAAGGAGGGTGAAGAAGATAGAGGTTCAAGGACGAGGCGGCGATCGGCGAGGCCAAATCCGAGATCGGGTAACCCGCCGAAGCATGTGCATGGTGAGCAAGTTGCCGCCGGGTGGCCGTCTTGGCTTTCCGCCGTTGCTGGTGAGGCTATCAATGGATGGATTCCTCGCCGTGCTGACACTTTTGAGAAGCTTGATAAAATTGGGCAAGGTACATATAGTAACGTGTACAAAGCTAGGGACACTTTGACAGGGAAGATTGTGGCTTTAAAGAAGGTTCGTTTTGACAATTTAGAGCCTGAGAGTATAAGATTTATGGCCAGAGAGATTCTCATCCTGCGGCGTTTGGATCATCCCAATGTTGTAAAATTGGAAGGTTTAGTGACGTCGCGGATGTCATGCAGTTTATATCTTGTATTTGAATATATGGAGCATGATTTGGCTGGACTTGCTGCGAGCCCTGGGATCAAGTTTACGGAACCACAGGTTAAATGTTACATGCATCAATTATTATCAGGCCTTGAACACTGTCACAATCGTCACACGCTGCATCGTGATATAAAGGGATCAAATCTTCTAATTGACAATGATGGGGTACTTAAAATTGCTGATTTTGGATTAGCTTCTGTCTTTGATCCTAATCACAAGCAGCCCATGACAAGTAGGGTGGTTACCCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTGTGGAGTGCTGGCTGCATTTTAGCTGAATTATTAGCTGGAAAGCCCATCATGCCTGGTCGCACAGAGGTGGAGCAGCTACACAAGATATTCAAGTTATGTGGTTCTCCTTCAGAGGAATACTGGAAAAAATCCAAGTTACCACATGCAACCATATTTAAGCCTCAACATTCGTACAAGCGATGCATATCAGAGACATTTAAAGACTTTCCACCATCATCTCTGCCATTAATTGAGACACTTCTTGCAATTGACCCGGCTGAACGCCAGACAGCCACGGCTGCTTTGCATAGTGAGTTCTTCACTACTAAGCCATATGCTTGTGAGCCTTCTAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAATTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGTAATGTGGATGGGCTGAAGAAAACACGTGCACGTGATCGAGGTGTAAGGGCAATGCCTGCTCCAGAAGCTAATGCTGAGATTCAAGCCAATCTTGACAGGCGACGTCTCATAACGCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCACTGGGATCTTCGCACCATGTCGATCCGATCTATGATCCTCCAGACGTTCCATTTAGCACTATGAACTTCTCATACTCAAAAGCAAGTATTCAGACATGGTCGGGTCCATTGATGGACCCAGCTGCTGTTGGTAATCCAAGAAGGAAGAAACACACGGCAGGTGATGGTCATGCACCATCGAGAAAGGATTTACGGAAAGATAAAAATTCTGCTCGGATTTAA 1713 46.35 MGCVFGKQVSGKPVEREEGKEEREEEGEEEREKEVRASGKAEVANNGGNRIRKEGEEDRGSRTRRRSARPNPRSGNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESIRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHTLHRDIKGSNLLIDNDGVLKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERQTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGLKKTRARDRGVRAMPAPEANAEIQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYSKASIQTWSGPLMDPAAVGNPRRKKHTAGDGHAPSRKDLRKDKNSARI 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44079946 44083660 + evm.model.ptg000013l.1131 HCH7g1131 548416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1131 570 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1131 570 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
HCH7g1131 570 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1131 570 MobiDBLite consensus disorder prediction 541 570 - -
HCH7g1131 570 MobiDBLite consensus disorder prediction 531 570 - -
HCH7g1131 570 CDD STKc_CDK9_like 113 397 - -
HCH7g1131 570 MobiDBLite consensus disorder prediction 478 498 - -
HCH7g1131 570 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
HCH7g1131 570 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
HCH7g1131 570 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH7g1131 570 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1131 570 MobiDBLite consensus disorder prediction 47 65 - -
HCH7g1131 570 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
HCH7g1131 570 MobiDBLite consensus disorder prediction 1 83 - -
HCH7g1131 570 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
HCH7g1131 570 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0786 HCH-Chr10:7981404 HCH7g1131 HCH-Chr7:44079946 8.20E-223 dispersed
HCH13g0702 HCH-Chr13:5729325 HCH7g1131 HCH-Chr7:44079946 5.80E-151 dispersed
HCH14g0179 HCH-Chr14:27401142 HCH7g1131 HCH-Chr7:44079946 4.40E-123 dispersed
HCH1g0137 HCH-Chr1:10363276 HCH7g1131 HCH-Chr7:44079946 4.70E-175 dispersed
HCH2g0832 HCH-Chr2:51828129 HCH7g1131 HCH-Chr7:44079946 1.30E-155 dispersed
HCH3g0083 HCH-Chr3:478617 HCH7g1131 HCH-Chr7:44079946 8.50E-158 dispersed
HCH3g0471 HCH-Chr3:3016538 HCH7g1131 HCH-Chr7:44079946 2.80E-199 dispersed
HCH4g0096 HCH-Chr4:516201 HCH7g1131 HCH-Chr7:44079946 2.60E-64 dispersed
HCH6g0679 HCH-Chr6:39966838 HCH7g1131 HCH-Chr7:44079946 6.60E-182 dispersed
HCH7g1131 HCH-Chr7:44079946 HCH8g0160 HCH-Chr8:6049572 3.10E-222 dispersed
HCH7g1131 HCH-Chr7:44079946 HCH7g1135 HCH-Chr7:44125502 4.60E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81649 PF00069 Pkinase 2.70E-68 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1131 K08819 - csv:101217952 980.319