Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1132 ATGTCTTTGAAGAATATAATTCAAGAAATGAGATCTAGGTCTCGCCGTATCGTTCAAGACGGAAACGGATTGGCCGTCGAAACCGGCGACGGGTTGGCTCAGAGCTGCTGGGCTTTCATGCCTCAGGAATTGTTGAGAGAAGTTTTGATTAAAATTGATAAGTCTGAGAATTCTTGGCCGCTGAGGAAGAGCGTTGTCGCCTGCGCTGGAGTTTGTAAGAGCTGGAGACGGATTATGAAAGAGATTGTTAAAACGCCGGAGGTTTCTGGTAGATTGACGTTTCCGATTTCCGTTAAACAGCCTGGCCCAAGGGGAAGGGGTTTGCTTCTTCACTGCTTCATAAAACGGAATCGACCCACACAAACCTATTGTCTTTACCTTAGTTTGACTAGTGCACTTGCTGATGATGGAAAGTTTCTTCTTGCTGCTCGGAAGTGTCGACGTGCAACCTGTACTGATTATATAATATCTCTACATGCTGATGACATATCAAAGGGAAGTGGCACCTTTATTGGGAAATTGAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGCACAGCCCCCTCATGCAGGAGCCAAGAATTTAAAGAGCCGTTCCTCTCGGCTTGTGAGCTTGAAACAAGTGTCACCTAAAGTTCCTGCCGGTAACTACCCTGTGGCTCACATCTCTTATGAACTAAATGTCTTGGGTTCAAGGGGTCCGCGGAGAATGCAGTGTAGCATGGATGCTATTCCGATCTCTGCAATTGAACCAGGCGGCGTGGCTCCAACACAGACTGAATTTACCTCAAGCCAGAGAGATGTTCTTCCTTCAATGAAATTTTTCCGTTCAAAATCGAATCACACGGATGATTCACCACCACCATCAGGACCTTCAACCAGTGAGAAGGATGGAGTTCTGGTGCTGAGAAACAAGGCTCCCCGGTGGCACGAACAGCTTCAGTGCTGGTGTCTGAATTTCCATGGACGAGTAACGATTGCTTCAGTTAAAAACTTCCAGTTAGTGGCTTCACCAGAAACTGAGCCTGCTGGACCTGGACCTCAACATGAGAACATCATCCTTCAATTTGGAAAAGTAGGAAAAGATATATTTACAATGGATTACAGATATCCAATCTCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACAAAAATTGCCTGTGAATGA 1188 45.2 MSLKNIIQEMRSRSRRIVQDGNGLAVETGDGLAQSCWAFMPQELLREVLIKIDKSENSWPLRKSVVACAGVCKSWRRIMKEIVKTPEVSGRLTFPISVKQPGPRGRGLLLHCFIKRNRPTQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDISKGSGTFIGKLRSNFLGTKFTIFDAQPPHAGAKNLKSRSSRLVSLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCSMDAIPISAIEPGGVAPTQTEFTSSQRDVLPSMKFFRSKSNHTDDSPPPSGPSTSEKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPETEPAGPGPQHENIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44085791 44088941 - evm.model.ptg000013l.1132 HCH7g1132 548417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1132 395 FunFam Tubby-like F-box protein 94 395 - -
HCH7g1132 395 ProSitePatterns Tub family signature 2. 380 395 IPR018066 -
HCH7g1132 395 Gene3D Tubby Protein; Chain A 95 395 IPR025659 -
HCH7g1132 395 ProSitePatterns Tub family signature 1. 323 336 IPR018066 -
HCH7g1132 395 PRINTS Tubby superfamily signature 373 395 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 154 170 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 305 322 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 219 246 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 323 339 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 352 371 IPR000007 -
HCH7g1132 395 PRINTS Tubby superfamily signature 170 194 IPR000007 -
HCH7g1132 395 MobiDBLite consensus disorder prediction 279 301 - -
HCH7g1132 395 Pfam Tub family 98 390 IPR000007 -
HCH7g1132 395 SUPERFAMILY Tubby C-terminal domain-like 86 395 IPR025659 -
HCH7g1132 395 PANTHER TUBBY-RELATED 32 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0183 HCH-Chr12:996414 HCH7g1132 HCH-Chr7:44085791 2.10E-114 dispersed
HCH4g1250 HCH-Chr4:8572864 HCH7g1132 HCH-Chr7:44085791 1.60E-10 dispersed
HCH6g0633 HCH-Chr6:38041089 HCH7g1132 HCH-Chr7:44085791 9.00E-101 transposed
HCH6g1661 HCH-Chr6:49522540 HCH7g1132 HCH-Chr7:44085791 6.40E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33903 PF01167 Tub 2.50E-107 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1132 K19600 - csv:101217713 658.292