Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1153 ATGAAAGCGTGTGCCAAGTGGCATGACCTTAATGGACTGTCTAATTCTAATGTCGCAGGAATTGATTTGTCTGCTATATTTTGTTCATGGTTTCTCAATATAATGGGTTGTGTTTTGGGTAAGTGTTGCACTTCCAATAGCAAGCTACAGTCTCCTGATGGCGAAGAAGTGGATGTCTGTGATGGCTTGCCGTGCAGTTTACAAGGGAAACATATACTAACAGGAAGGTCGTTGGAGTATGTGCGTGTGCCTTCTCATAATTACCTTTTGGAATACTCGCTCCTCACTCAGCGCGGCTATTATCCCGATTCCCTGGATAAAGAAAACCAAGACAGTTTCTGTGTTTGTACACAAATTCAAGGTGATCCGAGTACCCATTTATTTGGTGTTTTTGATGGGCACGGTCAGTTTGGCTCAGAATGTTCGAATTTCGTGAAGGATAGAGGTATGGAAATACTATGTAATGACCTGATGTTGTTGGAAGATCCTGTAAAAGCTTATAATTTTGCCTTTTTAAAGACAAATCATGAATTAAAAATTAGTGAGATTGATGATTCTATGAGTGGTACAACGGCTATTACTGTGCTTGTCATCGGGAACACCCTTTACATTGCGAATGTGGGTGATTCAAGAGCGGTTATTGCTGTTAAAAATGGGAATCAAATCATTGCTGAAGATCTGTCCCATGATCAAACACCATTTAGGAAGGATGAGTACGAGAGAGTAAAGCTAGCTGGGGCTAGGGTATTGACTATTGATCAAATTGAAGGGCTTAAGGATCCAGCAATTCAGGAATGGGGTGATGAGGAGAGCCAGGGAAGCGATCCGCCTCGGTTGTGGTTTCCTAACAGCTTATTTCCTGGCACTGCATTTACGAGGAGTGTGGGAGATAGTACAGCTGAGCAGATTGGTGTTATTGCTGCCCCTGAGGTTTCAGTGGTTCAGCTGACTCCAAACCATCTTTTCTTTATTGTTGCAAGCGATGGAGTTTTTGAGTTCCTGACAAGTCAAGCTGTTGTTGAAATGGCCGCAAGGTATTCAGATCCACGGGATGCTTGCTCTGCTATTGCCGGAGAGTCATACAAGCAATGGTTGGAACATGAAAACCGGACAGATGATATAACAATCATTATCGTTCACATCAAAGGCCTCCTCAATTCAGGTGCTGTTGCCACTGATGGGTTAAGTGGGATCAGTATTAGGAATGCAAGCTCAGGGAGAGAGACTTCTGAGATATCTGCTACCACTGGTTCAGAAGTATATCGCTCCATTAGAAGCGATTTCTCAGATCTACAGATCTCTCAGCATTTGGGTTTGATGAACAAGAGTACGTCAATTGTTGTTCCATCTCCAGCCCCGCACCGACCCGTAGAAGTGGTGGAAGTGGGCTAG 1392 43.61 MKACAKWHDLNGLSNSNVAGIDLSAIFCSWFLNIMGCVLGKCCTSNSKLQSPDGEEVDVCDGLPCSLQGKHILTGRSLEYVRVPSHNYLLEYSLLTQRGYYPDSLDKENQDSFCVCTQIQGDPSTHLFGVFDGHGQFGSECSNFVKDRGMEILCNDLMLLEDPVKAYNFAFLKTNHELKISEIDDSMSGTTAITVLVIGNTLYIANVGDSRAVIAVKNGNQIIAEDLSHDQTPFRKDEYERVKLAGARVLTIDQIEGLKDPAIQEWGDEESQGSDPPRLWFPNSLFPGTAFTRSVGDSTAEQIGVIAAPEVSVVQLTPNHLFFIVASDGVFEFLTSQAVVEMAARYSDPRDACSAIAGESYKQWLEHENRTDDITIIIVHIKGLLNSGAVATDGLSGISIRNASSGRETSEISATTGSEVYRSIRSDFSDLQISQHLGLMNKSTSIVVPSPAPHRPVEVVEVG 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44411185 44414887 - evm.model.ptg000013l.1153 HCH7g1153 548438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1153 463 PANTHER PROTEIN PHOSPHATASE 92 380 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH7g1153 463 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 86 383 - -
HCH7g1153 463 SUPERFAMILY PP2C-like 77 383 IPR036457 -
HCH7g1153 463 CDD PP2Cc 107 381 IPR001932 -
HCH7g1153 463 Gene3D - 85 383 IPR036457 -
HCH7g1153 463 SMART PP2C_4 92 379 IPR001932 -
HCH7g1153 463 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169(InterPro)
HCH7g1153 463 ProSiteProfiles PPM-type phosphatase domain profile. 91 381 IPR001932 -
HCH7g1153 463 Pfam Protein phosphatase 2C 107 359 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1153 HCH-Chr7:44411185 HCH8g0724 HCH-Chr8:43940579 7.80E-115 dispersed
HCH6g1641 HCH-Chr6:49424891 HCH7g1153 HCH-Chr7:44411185 1.50E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1153 - - - 0.0