Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1169 ATGGGAATTTCATTCAGTAACAGAAGAAGAAACAACTATCTTCAACACCCACCTCCTCCTCCTCCTCCCCACTATTTATCTTCTTCTTCTTACTATCAACACCCTCCTGAAACCCCATCTCCGGCGCCTCCTCCGCCACCTCCGCCGCCACAAAACCATCCTTATATTCCAACCCAACTACCACTCTCACTTCCTCCTCCTCCGCCACCTCACTCTTACTACTTCTCCAACGGGTACAATTCATGTAATTATGGAAATTCTTCAATGGGTCGTTTCAATTTCCATCCTTTTTATGCTAATAATCAGAGTAATGGTCATGGGTGGTCTCAAATTCGACCGTCGCCGTCGTTGCTTCCTCCTCCGTCTCCGCCGCTTCCGTTTGTCGAGCATCGGCAGGCTAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGGTTGAGATTGATGAGGAGAACCCTGATCTTCATTTGGTTTCTTTCGTTTTCGATGCCTTGTATGATGGAAGCATAACCATTTTGTTTTTTGCCAAGGAAGAGCCTAACTGTAGGTTTGTTCCAGTATATCCTGAGGCCTTTAAGCCAGTGAGAGTTCCCTTTCAAAAAGGTCCTGCTCAGAAATTCTTTCAACCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGACGATCTCTCAAAACCCTCACCTGCAGAAGATATCTTTCCTCTTGTTATATCAGCTGAAACTTGCTCGCCCCCTCAGTCCAGTGATGAACGTATCGGCGAGCCTCTACCAGATGATTCTCACATGCAAATTACTCAAGCCGTTCTGGAAAAGAAAAATGGTGGTCCATTTCAAGTTAAAGTCGTAAGGCAACTATTGTGGATTGACGGAGTGCGTTATGAGTTACGTGAGATATTTGGAATAGGGAGTTCATCAGCTGAAGGTTTTGATGACAATGACTCTGGGAAGGAGTGTGTGATTTGCATGACTGAACCTAAGGATACTGCTGTATTACCTTGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAGGCTTCAATCAAATAAATGTCCCATTTGCCGTCAACCCATTGAAGAACTTATAGAAATCAAGATAAACAATAGTGACCAGTGA 1137 44.59 MGISFSNRRRNNYLQHPPPPPPPHYLSSSSYYQHPPETPSPAPPPPPPPPQNHPYIPTQLPLSLPPPPPPHSYYFSNGYNSCNYGNSSMGRFNFHPFYANNQSNGHGWSQIRPSPSLLPPPSPPLPFVEHRQAKKVRNDVNVHKDTLRVEIDEENPDLHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPEAFKPVRVPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPPQSSDERIGEPLPDDSHMQITQAVLEKKNGGPFQVKVVRQLLWIDGVRYELREIFGIGSSSAEGFDDNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 44553207 44560818 + evm.model.ptg000013l.1169 HCH7g1169 548454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1169 378 PANTHER MAHOGUNIN 74 376 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
HCH7g1169 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 372 IPR013083 -
HCH7g1169 378 CDD mRING-HC-C3HC5_MGRN1-like 321 362 IPR045195 -
HCH7g1169 378 SMART ring_2 323 361 IPR001841 -
HCH7g1169 378 FunFam probable E3 ubiquitin-protein ligase LOG2 307 372 - -
HCH7g1169 378 MobiDBLite consensus disorder prediction 1 63 - -
HCH7g1169 378 MobiDBLite consensus disorder prediction 36 63 - -
HCH7g1169 378 SUPERFAMILY RING/U-box 317 368 - -
HCH7g1169 378 ProSiteProfiles Zinc finger RING-type profile. 323 362 IPR001841 -
HCH7g1169 378 Pfam Zinc finger, C3HC4 type (RING finger) 321 367 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1238 HCH-Chr10:44068284 HCH7g1169 HCH-Chr7:44553207 4.60E-06 dispersed
HCH11g0276 HCH-Chr11:2505616 HCH7g1169 HCH-Chr7:44553207 2.60E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1169 K27504 - csv:101203938 583.563