Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1171 | ATGTCTCATATTGCTGTGGAAAGAAATAGGAGGAGACAGATGAATGAACATCTCAGGGTTCTGCGCTCTTTGACCCCTTGTTTTTATATCAAAAGGGGAGATCAAGCATCGATTATTGGGGGTGTGGTAGAGTTCATCAAGGAGTTGCACCAAGTTCTGCAATCACTGGAGTCAAACAAACGAAGGAAGAGTCTGAGCCCTAGCCCCGGGCCGAGTCCAAGGCTGCCGCCACCACAGCTTGCCGATGGTCCCTTCGGGTTTGAAACTATTGGAAAGGAAGTCGGAGCTTGCTGCAACTCGTCGGTAGCAGACGTGGAAGCGAAGCTTTCAGGATCAAACGTGTTGTTGAAGATCATCTCCAAAAGAATTCCAGGCCAACTTGCCAAGATGATCGCTGTCTTGGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATCAGTAGCATGGAAGACACTGTTCTTTACTCTTTTGTTATCAAGATAGGACTTGAATGTCAGCTTAGTTTGGAGGAACTTGCATATGAAGTTCAACAAAGCTTCTGCTCTCAAAGTTTACTTATATGCCAGTGA | 570 | 46.14 | MSHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVVEFIKELHQVLQSLESNKRRKSLSPSPGPSPRLPPPQLADGPFGFETIGKEVGACCNSSVADVEAKLSGSNVLLKIISKRIPGQLAKMIAVLERLSFEVLHLNISSMEDTVLYSFVIKIGLECQLSLEELAYEVQQSFCSQSLLICQ | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 44598974 | 44600636 | - | evm.model.ptg000013l.1171 | HCH7g1171 | 548456 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1171 | 189 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g1171 | 189 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 50 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g1171 | 189 | Gene3D | - | 1 | 64 | IPR036638 | GO:0046983(InterPro) | |
| HCH7g1171 | 189 | FunFam | Transcription factor MUTE | 1 | 66 | - | - | |
| HCH7g1171 | 189 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 180 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
| HCH7g1171 | 189 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - | |
| HCH7g1171 | 189 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983(InterPro) | |
| HCH7g1171 | 189 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 69 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g1295 | HCH-Chr11:44955817 | HCH7g1171 | HCH-Chr7:44598974 | 4.20E-44 | dispersed | |
| HCH7g1171 | HCH-Chr7:44598974 | HCH7g1424 | HCH-Chr7:46983964 | 2.30E-41 | dispersed | |
| HCH7g1171 | HCH-Chr7:44598974 | HCH4g0243 | HCH-Chr4:1468335 | 4.40E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33908 | PF00010 | HLH | 1.00E-07 | No_clan | HCH | TF |
Pathway information