Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1242 ATGAGATCAAAACAATATTTCAAGACAACAAAAAATTTACTCTACCCTACACCATGGGTAAAGAAACAATGGTTACCTGTACGGAAGCATTATGTTTCTTCAAAAGTCATTTTCACCGATAAAGATAACACAGTCATTCTTCTCGACGGAGAAGTCATTGCGTATAGAAAAAGTATCTGCGAGCTGCCGTCCTCTAGAAACGTGCCACTTGGACCTCTACAGTTGCAGTGTTCCAAAAAAGGAGATTCATCATCAACAGCAGTCTCCGTCGTTAAAAATTCTAAAATTTTGAAAGAGTCAGCGAGGATTCCAAACCCTATATTTAAGGGAAATCCCGGCGCTTTTCTCTCTCCATCGTTCCCAAAATTCCATGAATATTTCCTTTCTCAAATTTCTGATTTTGGGTCTTCCAATTTTCCTCCTCTTCTTCTTCTTCCATCATCTAATTCGTCCCGTGGCTTTGCTGTTAGTCAATCTTTTCGGCTTTATCTTCTTCCTTTTCGCCGCGGGTTCCATTCTTCTGAGAGGTTGAAGGACTCTTTGCATAGTGAGAATGATGAAATACATCAGAATTCTAGACCTTTTTCATTCACCTTGTTTAGTTTTTCAGGTTTAGGATTCTTTGTATTTGAGGTTCTCTATCTGAGTCTCTCTGTTTTGATCTTAGCAATGGATTTGAAAGTGAGAGATGACGTTGGAGGTATCACAACACCTAAGGAGACAGTGTGCGAGGACGGATCTTTGAATTCGAAGGTGAAGGGTACGGGAAGCATTAGTAGCAAAGACATGATTTTCAGAGCAGATAAGATTGATCTGAAAAACTTAGATATGCAGCTGGAGAAGCACTTGAGTCGTGTTTGGTCGAGGAGTGTTGATACACAAAACCAAAAACCAAAAGAGGAGTGGGAGATTGATTTGTCTAAACTTGATATTAGATATGTTGTTGCTCATGGTACTTATGGAACAGTTTTCAGGGGCACATATGATAACCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACATCTGCTGAAACTGCTGCTTTGAGGGCATCATTTAGGCAAGAGGTTGCAGTTTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAGGCTCTTCCATGGACGGTAACAATTCGCTTCCATCTAGAGCTTGCTGTGTCGTTGTGGAGTATCTTCCGGGTGGGACATTAAAACAATTTTTGATAAGAAACAGAAGAAAGAAACTTGCCTTTAAGGTTGTGATTCAAATAGCTTTGGATCTGTCTAGAGGGCTTAGCTATCTACACTCAAAGAAGATTGTACATCGTGATGTCAAAACAGAAAATATGTTGCTTGATGGCCAGAGAACTCTTAAAATTGCTGATTTTGGGGTTGCCCGCGTTGAAGCTCAAAACCCGAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTATAATAGAAGATGTGATGTCTATAGCTTTGGTATCTGCTTATGGGAAGTTTACTGCTGCGATATGCCCTACCCCGATCTTAGTTTTGCTGATGTGTCATCTGCCGTTGTTCGACAGAATCTGCGACCGGACATCCCCAAATGCTGTCCAAGTTCTCTGGCAAATGTAATGAAGAAATGTTGGGACGCGAATCCAGCGAAACGCCCTGAAATGGACGAGGTTGTGAAAATGTTAGAAGCGATCGATACGAGTAAAGGCGGGGGGATGATTCCTGAAGACCAAGCTTCCGGCTGCTTTTGTTTCGGCCCTCCCCGCGGTCCTTGA 1851 42.36 MRSKQYFKTTKNLLYPTPWVKKQWLPVRKHYVSSKVIFTDKDNTVILLDGEVIAYRKSICELPSSRNVPLGPLQLQCSKKGDSSSTAVSVVKNSKILKESARIPNPIFKGNPGAFLSPSFPKFHEYFLSQISDFGSSNFPPLLLLPSSNSSRGFAVSQSFRLYLLPFRRGFHSSERLKDSLHSENDEIHQNSRPFSFTLFSFSGLGFFVFEVLYLSLSVLILAMDLKVRDDVGGITTPKETVCEDGSLNSKVKGTGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSRSVDTQNQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATSAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKGSSMDGNNSLPSRACCVVVEYLPGGTLKQFLIRNRRKKLAFKVVIQIALDLSRGLSYLHSKKIVHRDVKTENMLLDGQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEVYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDANPAKRPEMDEVVKMLEAIDTSKGGGMIPEDQASGCFCFGPPRGP 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45244153 45251530 - evm.model.ptg000013l.1242 HCH7g1242 548527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1242 616 ProSiteProfiles Protein kinase domain profile. 309 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 Pfam Protein tyrosine and serine/threonine kinase 313 587 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 CDD STKc_MAP3K-like 315 587 - -
HCH7g1242 616 FunFam Serine/threonine-protein kinase HT1 413 598 - -
HCH7g1242 616 SMART serkin_6 309 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 160 588 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
HCH7g1242 616 Gene3D Phosphorylase Kinase; domain 1 298 390 - -
HCH7g1242 616 Gene3D Transferase(Phosphotransferase) domain 1 413 599 - -
HCH7g1242 616 FunFam Kinase suppressor of Ras 1 298 392 - -
HCH7g1242 616 PRINTS Tyrosine kinase catalytic domain signature 514 536 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 PRINTS Tyrosine kinase catalytic domain signature 558 580 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 PRINTS Tyrosine kinase catalytic domain signature 410 423 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 PRINTS Tyrosine kinase catalytic domain signature 448 466 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1242 616 SUPERFAMILY Protein kinase-like (PK-like) 286 587 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1672 HCH-Chr4:17576049 HCH7g1242 HCH-Chr7:45244153 1.10E-181 dispersed
HCH7g1242 HCH-Chr7:45244153 HCH8g1378 HCH-Chr8:48511990 5.30E-151 dispersed
HCH9g0113 HCH-Chr9:592760 HCH7g1242 HCH-Chr7:45244153 2.80E-40 dispersed
HCH7g1242 HCH-Chr7:45244153 HCH9g0151 HCH-Chr9:875802 5.60E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81654 PF07714 PK_Tyr_Ser-Thr 8.00E-59 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1242 - - - 0.0