Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1246 ATGAATATGAAAAACTTCTCAAACTTCCCTCTTATCATCCTCCTCTCCATCATCTTCCTCTCCAAACCTTCCCACCAAGCAACCGAATCTCCGCCGCCGCTGCCGCTGCAACCGCCGTTTTTCCCAAACCCTAGACTTCTCAAAGCATTCACAGCTCTCCAAGCATGGAAACACACCATCACCGACGACCCAAAAAACTTCACCTCCAACTGGTACGGCCCAGACATCTGCAACTACACCGGAATCTTTTGTGCTCCGGCACCCGACGATCCCTACACTCTCACCGTCGCCGGTATAGACCTAAACCACGCTAACATCGCCGGTTCTCTCCCGGAAGACCTCAGTCTCTTAACTGACCTCGCTCTCTTTCATATCAACTCTAACCGCTTCTCCGGCACCGTGCCGGAGAGCTTTCGCTGCCTCGTCCTCCTCTTCGAATTCGATATCAGTAACAACGACTTCTCCGGCCCTTTCCCGGCAGTTCTTCTCTCTCTTCCTTCACTAAAATTTCTAGATATTCGTTATAACAAATTCTATGGAGATGTTCCTTCACGTCTCTTTGATATGAAACTTGATGCCCTTTTCATTAACAATAACAATTTCAGATTTTCTTTGCCTAAAAATATTGGGAATTCTCCGGTTTCTGTTTTGGTTTTTGCTAATAATAATATCAATGGCTGTCTCCCTTCGAGTTTGGCCAAAATGAAGGATACCCTAAACGAGATTATAATTACTAATAGTGCCTTAATTGGTTGTTTACCGCCGGAGATTGGCTTGTTGAAAAACCTCACGGTTTTCGACGTAAGCGATAACGAACTTGTCGGTCCGTTACCTGAAACAATGGCCGGGATGAAGAAGTTAGAGCAGTTAAATGTGGCGCATAACAAGTTATCCGGTGATATTCCGGCGAGTATTTGCTCGCTGCCGAATTTGCAAAACTTTACGTATTCGTATAACTTCTTCTGCGGTGAGCCGCCGGTGTGTCTTAAGCTGCAAGATAAAGATGACCGGAAAAACTGTATACCGGATAGGCCGTTGCAGCGGTCGCCGGAAGAATGTGCCGCTTTTAATGCTCATCCGGTTGATTGTGGTATTTTTGGCTGTACTCGTCGGCCGCCGCCACCTCCGCCACCGTCTCCTCCTCCTCCCTCGGATCCGTATTGA 1164 47.34 MNMKNFSNFPLIILLSIIFLSKPSHQATESPPPLPLQPPFFPNPRLLKAFTALQAWKHTITDDPKNFTSNWYGPDICNYTGIFCAPAPDDPYTLTVAGIDLNHANIAGSLPEDLSLLTDLALFHINSNRFSGTVPESFRCLVLLFEFDISNNDFSGPFPAVLLSLPSLKFLDIRYNKFYGDVPSRLFDMKLDALFINNNNFRFSLPKNIGNSPVSVLVFANNNINGCLPSSLAKMKDTLNEIIITNSALIGCLPPEIGLLKNLTVFDVSDNELVGPLPETMAGMKKLEQLNVAHNKLSGDIPASICSLPNLQNFTYSYNFFCGEPPVCLKLQDKDDRKNCIPDRPLQRSPEECAAFNAHPVDCGIFGCTRRPPPPPPPSPPPPSDPY 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45311020 45312183 - evm.model.ptg000013l.1246 HCH7g1246 548531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1246 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 38 383 IPR051582 -
HCH7g1246 387 Gene3D Ribonuclease Inhibitor 49 342 IPR032675 -
HCH7g1246 387 Pfam Leucine rich repeat 262 315 IPR001611 GO:0005515(InterPro)
HCH7g1246 387 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 236 325 - -
HCH7g1246 387 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
HCH7g1246 387 FunFam Leucine-rich repeat extensin-like protein 1 50 211 - -
HCH7g1246 387 SUPERFAMILY L domain-like 49 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0138 HCH-Chr7:929134 HCH7g1246 HCH-Chr7:45311020 2.50E-40 dispersed
HCH7g1246 HCH-Chr7:45311020 HCH8g0769 HCH-Chr8:44314220 1.70E-06 dispersed
HCH7g1246 HCH-Chr7:45311020 HCH12g0330 HCH-Chr12:1904102 2.50E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0330 . 59 397 Leucine-rich Repeat extension Gene Families AT1G62440 60.6 8.5e-53 205.7
HCH13g1116 . 53 241 Leucine-rich Repeat extension Gene Families AT1G62440 63.5 3.0e-42 170.6
HCH12g0665 . 61 400 Leucine-rich Repeat extension Gene Families AT1G62440 59.4 8.8e-42 169.1
HCH10g0457 . 63 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.5 1.7e-40 164.9
HCH8g0769 . 63 232 Leucine-rich Repeat extension Gene Families AT1G62440 67.6 2.8e-40 164.1
HCH10g0457 . 22 413 Leucine-rich Repeat extension Gene Families AT4G13340 72.3 6.5e-66 249.2
HCH8g0769 . 1 414 Leucine-rich Repeat extension Gene Families AT4G13340 70.0 7.9e-64 242.3
HCH12g0330 . 27 390 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 3.7e-53 206.8
HCH13g1116 . 21 265 Leucine-rich Repeat extension Gene Families AT4G13340 62.9 6.5e-50 196.1
HCH12g0665 . 22 220 Leucine-rich Repeat extension Gene Families AT4G13340 70.9 1.5e-43 174.9
HCH7g1246 . 41 370 Leucine-rich Repeat extension Gene Families AT4G13340 62.8 3.7e-37 153.7
HCH10g0457 . 23 409 Leucine-rich Repeat extension Gene Families AT3G24480 71.8 1.9e-71 266.9
HCH8g0769 . 29 411 Leucine-rich Repeat extension Gene Families AT3G24480 70.8 4.5e-68 255.8
HCH12g0330 . 25 397 Leucine-rich Repeat extension Gene Families AT3G24480 60.1 3.1e-61 233.0
HCH13g1116 . 29 265 Leucine-rich Repeat extension Gene Families AT3G24480 59.5 1.4e-48 191.0
HCH12g0665 . 17 220 Leucine-rich Repeat extension Gene Families AT3G24480 64.9 4.2e-42 169.5
HCH7g1246 . 41 370 Leucine-rich Repeat extension Gene Families AT3G24480 59.2 2.7e-36 150.2
HCH7g1246 . 11 369 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 1.2e-59 227.6
HCH12g0330 . 56 390 Leucine-rich Repeat extension Gene Families AT3G22800 54.5 4.3e-44 176.0
HCH7g0138 . 38 377 Leucine-rich Repeat extension Gene Families AT3G22800 53.4 9.0e-42 168.3
HCH10g0457 . 75 399 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 1.5e-36 151.0
HCH12g0330 . 43 390 Leucine-rich Repeat extension Gene Families AT5G25550 64.9 6.7e-60 228.4
HCH7g0138 . 42 377 Leucine-rich Repeat extension Gene Families AT5G25550 60.4 9.1e-41 164.9
HCH8g0769 . 49 229 Leucine-rich Repeat extension Gene Families AT5G25550 74.0 1.6e-40 164.1
HCH10g0457 . 49 229 Leucine-rich Repeat extension Gene Families AT5G25550 72.4 2.5e-38 156.8
HCH12g0665 . 61 404 Leucine-rich Repeat extension Gene Families AT5G25550 63.5 2.8e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37