Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1246 ATGAATATGAAAAACTTCTCAAACTTCCCTCTTATCATCCTCCTCTCCATCATCTTCCTCTCCAAACCTTCCCACCAAGCAACCGAATCTCCGCCGCCGCTGCCGCTGCAACCGCCGTTTTTCCCAAACCCTAGACTTCTCAAAGCATTCACAGCTCTCCAAGCATGGAAACACACCATCACCGACGACCCAAAAAACTTCACCTCCAACTGGTACGGCCCAGACATCTGCAACTACACCGGAATCTTTTGTGCTCCGGCACCCGACGATCCCTACACTCTCACCGTCGCCGGTATAGACCTAAACCACGCTAACATCGCCGGTTCTCTCCCGGAAGACCTCAGTCTCTTAACTGACCTCGCTCTCTTTCATATCAACTCTAACCGCTTCTCCGGCACCGTGCCGGAGAGCTTTCGCTGCCTCGTCCTCCTCTTCGAATTCGATATCAGTAACAACGACTTCTCCGGCCCTTTCCCGGCAGTTCTTCTCTCTCTTCCTTCACTAAAATTTCTAGATATTCGTTATAACAAATTCTATGGAGATGTTCCTTCACGTCTCTTTGATATGAAACTTGATGCCCTTTTCATTAACAATAACAATTTCAGATTTTCTTTGCCTAAAAATATTGGGAATTCTCCGGTTTCTGTTTTGGTTTTTGCTAATAATAATATCAATGGCTGTCTCCCTTCGAGTTTGGCCAAAATGAAGGATACCCTAAACGAGATTATAATTACTAATAGTGCCTTAATTGGTTGTTTACCGCCGGAGATTGGCTTGTTGAAAAACCTCACGGTTTTCGACGTAAGCGATAACGAACTTGTCGGTCCGTTACCTGAAACAATGGCCGGGATGAAGAAGTTAGAGCAGTTAAATGTGGCGCATAACAAGTTATCCGGTGATATTCCGGCGAGTATTTGCTCGCTGCCGAATTTGCAAAACTTTACGTATTCGTATAACTTCTTCTGCGGTGAGCCGCCGGTGTGTCTTAAGCTGCAAGATAAAGATGACCGGAAAAACTGTATACCGGATAGGCCGTTGCAGCGGTCGCCGGAAGAATGTGCCGCTTTTAATGCTCATCCGGTTGATTGTGGTATTTTTGGCTGTACTCGTCGGCCGCCGCCACCTCCGCCACCGTCTCCTCCTCCTCCCTCGGATCCGTATTGA 1164 47.34 MNMKNFSNFPLIILLSIIFLSKPSHQATESPPPLPLQPPFFPNPRLLKAFTALQAWKHTITDDPKNFTSNWYGPDICNYTGIFCAPAPDDPYTLTVAGIDLNHANIAGSLPEDLSLLTDLALFHINSNRFSGTVPESFRCLVLLFEFDISNNDFSGPFPAVLLSLPSLKFLDIRYNKFYGDVPSRLFDMKLDALFINNNNFRFSLPKNIGNSPVSVLVFANNNINGCLPSSLAKMKDTLNEIIITNSALIGCLPPEIGLLKNLTVFDVSDNELVGPLPETMAGMKKLEQLNVAHNKLSGDIPASICSLPNLQNFTYSYNFFCGEPPVCLKLQDKDDRKNCIPDRPLQRSPEECAAFNAHPVDCGIFGCTRRPPPPPPPSPPPPSDPY 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45311020 45312183 - evm.model.ptg000013l.1246 HCH7g1246 548531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1246 387 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 38 383 IPR051582 -
HCH7g1246 387 Gene3D Ribonuclease Inhibitor 49 342 IPR032675 -
HCH7g1246 387 Pfam Leucine rich repeat 262 315 IPR001611 GO:0005515(InterPro)
HCH7g1246 387 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 236 325 - -
HCH7g1246 387 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
HCH7g1246 387 FunFam Leucine-rich repeat extensin-like protein 1 50 211 - -
HCH7g1246 387 SUPERFAMILY L domain-like 49 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0138 HCH-Chr7:929134 HCH7g1246 HCH-Chr7:45311020 2.50E-40 dispersed
HCH7g1246 HCH-Chr7:45311020 HCH8g0769 HCH-Chr8:44314220 1.70E-06 dispersed
HCH7g1246 HCH-Chr7:45311020 HCH12g0330 HCH-Chr12:1904102 2.50E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1246 - - - 0.0