Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1247 ATGGGAAATGCCGATTTCGAATGCCCGCACCGGGTGGCGATTCCGCCCACAAAACCATTTCTCAAGTCTTTTAGTTCAAACTTGAAGGAAACTTTCTTCCCTGATGACCCTTTTAGACTGTTCAAAAACCAGCCTCTTCCACGAAAGTTGGTTCTTGGCTTCAAGTACTTTGTGCCCATTTTTGAATGGGCTCCTAGTTACACTTTCGATTTCTTTAAATCCGATCTCGTCTCCGGAATCACCATAGCTAGCTTAGCCGTTCCTCAGGGAATCAGCTATGCTAATTTGGCCAGCATCCCACCAATTATCGGACTTTATTCGAGCTTTGTGCCTCCGTTGATATACGCCATGTTAGGAAGCTCGAAGGATGTAGCGGTCGGGACGGTGGCGGTAGCGTCGCTTCTGATGTCAGCCATGCTAGGAAAAGAAGTAAGCCCTGTGGAGCACCAAAAGCAATACGTTCAGCTTGTTTTCACTGCAACTTTCTTTGCTGGGGTTTTTCAAGCTTCTCTTGGCTTCTTAAGATTAGGGCTGATCGTGGATTTCTTGTCACATGCAACGATAGTGGGATTCATGGGTGGGGCAGCCACTGTGGTTTGTCTTCAACAGCTGAAAGGCCTTCTTGGTTTGCTTCATTTTACTCACGAGACTGATATTGTATCTGTTATGCGCTCTGTATTTACTCAAACTCACCAATGGAGATGGGAAAGTGTAGTGTTGGGTTGCTGTTTTCTCTTCTTTCTCCTTCTCACCAGATATTTTAGCAAGAAAAAAGCAATCTTCTTTTGGATAAATGCTTTGGCTCCCTTAACTTCTGTCATCTTAGGAAGCATCCTTGTCTTTCTCACTCATGCTGAAAAACATGGCGTCCAAGTGATTGGGAACTTGAAGAAAGGCTTGAATCCACCATCTGTATCTGACTTAGCTTTTGGATCTCCTTATCTCTCTACAGCCATTAAAACAGGGATCATCACTGGAATTATAGGCCTTGCGGAAGGAGTAGCGGTCGGAAGAAGTTTTGCCGCGTTTAAGAACTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAATATTGCTGGTTCTTGCACTTCTTGCTACCTGACTTCAGGGCCATTTTCGAGAAGTGCGGTGAATTTCAATGCGGGATGTAAAACTGCGGTGTCGAATATTGTAATGTCAACTGCAGTGATGATCACTCTGTTGTTTTTGACGCCATTCTTTTATTACACTCCTCTGGTGGTGCTCTCATCTATAATCATCACTGCTATGCTTGGCCTCATTGACTACGAAGCAGCCATCCACCTTTGGAAAATCGACAAGTTCGACTTTGTTGTTTGCCTCGGTGCATATACCGGTGTCGTCTTTGCCAGTGTTGAAGCAGGCTTGGTCATTGCAATCGCTCTCTCTTTGTTAAGATTGCTTCTCTTTGTCGCGAGGCCAAGGACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTTCAGAAGCATTGAACAATACCCAACAGCTAGCAATGTGCCTGGAATTCTCATCCTTCAATTAGAGGCTCCTATCTATTTTGCAAATTCAAACTATCTGAGAGAAAGGATTTCAAGGTGGATTACTGATGAAGAAGAGAGGATAAAATCTTCAGGAGAAACCAGCTTGCAGTATATAATTTTAGACCTTACCGGCGTAAGTAGCATTGACACAAGTGGGATCAGCATGCTTGAAGAGATTAAGAAGGGTGCTGAAAGAAAGGGACTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATTAAAAAGCTAGAAAAGTCCAAGTTCATTGAGGTCATTGGACAGGAATGGATCTATCTCACAGTGGGAGAGGCAGTAACAGCCTGCAACTTCATGCTCCACACATGGAAGCCAAGCCCTGTTGCTGCTGAAGTAGATTCCCCTGTCAACAGTGTCTAG 1950 44.05 MGNADFECPHRVAIPPTKPFLKSFSSNLKETFFPDDPFRLFKNQPLPRKLVLGFKYFVPIFEWAPSYTFDFFKSDLVSGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSKDVAVGTVAVASLLMSAMLGKEVSPVEHQKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGLLGLLHFTHETDIVSVMRSVFTQTHQWRWESVVLGCCFLFFLLLTRYFSKKKAIFFWINALAPLTSVILGSILVFLTHAEKHGVQVIGNLKKGLNPPSVSDLAFGSPYLSTAIKTGIITGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTSGPFSRSAVNFNAGCKTAVSNIVMSTAVMITLLFLTPFFYYTPLVVLSSIIITAMLGLIDYEAAIHLWKIDKFDFVVCLGAYTGVVFASVEAGLVIAIALSLLRLLLFVARPRTLVLGNIPNSTIFRSIEQYPTASNVPGILILQLEAPIYFANSNYLRERISRWITDEEERIKSSGETSLQYIILDLTGVSSIDTSGISMLEEIKKGAERKGLKLVLANPRSEVIKKLEKSKFIEVIGQEWIYLTVGEAVTACNFMLHTWKPSPVAAEVDSPVNSV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45318031 45323195 - evm.model.ptg000013l.1247 HCH7g1247 548532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1247 649 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
HCH7g1247 649 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
HCH7g1247 649 Pfam STAS domain 504 622 IPR002645 -
HCH7g1247 649 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
HCH7g1247 649 PANTHER SULFATE TRANSPORTER 29 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1247 649 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
HCH7g1247 649 Gene3D STAS domain 483 628 IPR036513 -
HCH7g1247 649 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1247 649 FunFam Sulfate transporter 31 483 629 - -
HCH7g1247 649 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1677 HCH-Chr4:18000567 HCH7g1247 HCH-Chr7:45318031 4.30E-292 dispersed
HCH4g1880 HCH-Chr4:50423243 HCH7g1247 HCH-Chr7:45318031 2.30E-189 dispersed
HCH7g1247 HCH-Chr7:45318031 HCH8g0768 HCH-Chr8:44302138 1.40E-194 dispersed
HCH7g1247 HCH-Chr7:45318031 HCH4g1371 HCH-Chr4:10035240 2.90E-200 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1247 K17471 - csv:101203205 1095.49