Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1262 ATGCCTGTAAGGCAAATGAAGGAGAGCTCAGAGCAGCATCTTGTAATCAAAACTCACTTTCAAAATTCCATGAACAACTCTGTTCAGAAAGCTCCAAAATCAGCTCAAAATGGCAAAGGTCCACCAAATCTGGAACCCCAGAATATGAAATCTAGGAATCAGACTTCTCCTCCTGCTAAAAACAGGGGTAGAAGAAGAGGTAGAGGTGGCAGGAAATCAGACCAAGGGGAAGTTTGTATGCGGCCTAGTTCCCGGCCCTGCACCGTGGCGAATAAGCCGGACGGAGCGGAGATGGCGGTCGGAGCTTTCGTGCCGGGTCCTGCTCCAAATGGTGGTCGAGGTTTTTGTGGAACTGATGTTGGTTTTAGGAATTCAAGCAAGTCTTTGAGTTTTGCTCCTAGGCCTGGTTTTGGACAAGCAGGGACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGAGAAGGATTTGAATCACTATGATGTTACAATTACTCCTGAAGTGGCTTCAAGAACTGTGAACCGAGCAATCGTGGCCGAATTAGTGAGATTATACAAAGAGTCTGATCTTGGAAATAGATTACCTGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCCTTTGTTTGGAAGGAATTCAACATTAAACTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGTGAGGGAGTATAAAGTAGTTCTTAAGTTTGTCGCACGTGCCAATTTGCACCATCTGGGTCAGTTTCTTGCTGGTAAGCGTGCTGATGCTCCACAAGAAGCTCTTCAAATACTTGACATTGTGTTAAGGGAGCTGTCATCCAAAAGGTACTGCCCCATAGGGAGATCCTTCTTTTCTCCTGACATTAGATCACCTCAACGGCTCGGTGACGGTTTAGAATCATGGTGTGGTTTTTACCAGAGTATTAGGCCTACTCAAATGGGACTATCTCTGAATATTGATATGGCTTCAGCTGCATTTATCGAGCCTCTCCCAGTACTTGAGTTTGTAGCCCAGCTTCTAGGGAAAGATGTTCTGTCACGGCCATTGTCCGATGCTGATAGAGTAAAGATAAAGAAGGCTCTTAGAGGGGTGAAAGTTGAGGTAACACACCGGGGTAATGTAAGGCGAAAGTATAGAGTTTCGGGTTTGACATCACAACCTACCAGAGAACTAGTATTTCCAGTTGATGACAACTCAACGATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGATTCATCATTCAACATGCACATCTACCTTGCCTTCAAGTAGGGAATCAGAAGAAGGCTAATTATTTGCCAATGGAGGCCTGCAAAATTGTAGAGGGCCAAAGATATACAAAAAGATTGAATGAGAAGCAAATAACCGCCCTTTTGAAAGTCACATGTCAAAGACCTAGGGATCGTGAAAATGACATTTTGCAAACTGTTCAACAAAATGCATATGACAACGATCCTTATGCAAAGGAGTTTGGAATTAAAATCAGCGAAAAACTAGCTTCTGTTGAAGCTAGAATTCTTCCGGCTCCATGGCTGAAATATCACGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAACGGAATGACTGTAAGCCGATGGTCGTGTATCAACTTCTCTAGAAGTGTGCAAGAGAATGTTGCTCGAGGGTTTTGTACTGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTCAATCCAGAACCAGTTATTCCAATATACAATGCGAGGCCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACGAAGGGAAAAGAGCTAGAACTACTATTAGCTATTTTACCTGACAACAACGGCTCGCTTTATGGTGACCTTAAGCGGATATGCGAAACCGATCTTGGTTTAATATCACAGTGCTGCCTCACAAAGCACGTGTTCAAGATTAGCAAGCAGTACCTAGCTAATGTGTCATTGAAGATCAATGTCAAAATGGGAGGTAGAAATACCGTTCTTTTAGATGCTATAAGTTGCAGGATACCTCTAGTGAGTGACATTCCTACCATAATATTTGGAGCGGATGTGACACATCCAGAAAATGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTAGTAGCCTCCCAGGATTGGCCTGAAGTGACAAAATATGCTGGTTTAGTTTGTGCTCAAGCTCACAGACAAGAACTTATACAAGACTTGTATAAAACGTGGCAGGATCCTGTTCGTGGTACAGTGAGTGGAGGCATGATCAGGGATCTTTTGGTTTCCTTTAGGAAAGCCACCGGGCAGAAGCCATTAAGAATAATATTTTACAGGGATGGTGTAAGCGAAGGACAATTCTATCAAGTTTTGCTTTACGAGTTAGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCAAATTACCAACCACCTGTAACCTTCATCGTCGTACAAAAACGACACCACACTCGGTTGTTTGCCAACAATTATAGAGACAGGAGTAGCACAGACAAGAGTGGGAACGTTTTGCCTGGCACTGTAGTTGACACCAAAATATGCCACCCTACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGTATTCAGGGGACTAGTCGGCCGGCGCACTACCATGTTCTTTGGGATGAGAATAATTTTACGGCAGATGGAATTCAGTCATTGACGAACAATCTTTGTTACACATACGCAAGGTGTACACGTTCGGTTTCTGTTGTCCCTCCAGCATATTACGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCCACCGGCCGTTCTGCCAAGTGCACACGAGCTGCCGGAGAGTCAGGTGTTCGTCCATTGCCAGCTTTGAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2970 43.64 MPVRQMKESSEQHLVIKTHFQNSMNNSVQKAPKSAQNGKGPPNLEPQNMKSRNQTSPPAKNRGRRRGRGGRKSDQGEVCMRPSSRPCTVANKPDGAEMAVGAFVPGPAPNGGRGFCGTDVGFRNSSKSLSFAPRPGFGQAGTKCIVKANHFFAELPEKDLNHYDVTITPEVASRTVNRAIVAELVRLYKESDLGNRLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGVSGPKRVREYKVVLKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDADRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFIIQHAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQQNAYDNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVSRWSCINFSRSVQENVARGFCTELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNVLPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSTGRSAKCTRAAGESGVRPLPALKENVKRVMFYC 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45486412 45493394 - evm.model.ptg000013l.1262 HCH7g1262 548547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1262 989 SUPERFAMILY Ribonuclease H-like 615 948 IPR012337 -
HCH7g1262 989 SMART PAZ_2_a_3 343 475 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH7g1262 989 MobiDBLite consensus disorder prediction 19 92 - -
HCH7g1262 989 SUPERFAMILY PAZ domain 333 493 IPR036085 GO:0005515(InterPro)
HCH7g1262 989 FunFam Argonaute 10 517 690 - -
HCH7g1262 989 Gene3D - 696 989 IPR036397 GO:0003676(InterPro)
HCH7g1262 989 FunFam protein argonaute 10-like 696 989 - -
HCH7g1262 989 Gene3D paz domain 332 457 - -
HCH7g1262 989 Gene3D - 517 690 - -
HCH7g1262 989 Pfam Piwi domain 628 947 IPR003165 GO:0003676(InterPro)
HCH7g1262 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 134 954 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
HCH7g1262 989 SMART DUF1785_2 286 338 IPR014811 -
HCH7g1262 989 Pfam Argonaute linker 2 domain 479 525 IPR032472 -
HCH7g1262 989 Pfam Argonaute linker 1 domain 287 337 IPR014811 -
HCH7g1262 989 CDD PAZ_argonaute_like 338 452 - -
HCH7g1262 989 ProSiteProfiles PAZ domain profile. 340 453 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH7g1262 989 ProSiteProfiles Piwi domain profile. 627 948 IPR003165 GO:0003676(InterPro)
HCH7g1262 989 CDD Piwi_ago-like 497 947 IPR045246 -
HCH7g1262 989 MobiDBLite consensus disorder prediction 19 58 - -
HCH7g1262 989 FunFam Protein argonaute-2 332 458 - -
HCH7g1262 989 Pfam PAZ domain 364 469 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH7g1262 989 Pfam Mid domain of argonaute 536 613 IPR032473 -
HCH7g1262 989 SMART Piwi_a_2 627 948 IPR003165 GO:0003676(InterPro)
HCH7g1262 989 Pfam N-terminal domain of argonaute 143 277 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0031 HCH-Chr3:222455 HCH7g1262 HCH-Chr7:45486412 0.00E+00 dispersed
HCH3g1134 HCH-Chr3:36351723 HCH7g1262 HCH-Chr7:45486412 3.20E-299 dispersed
HCH7g0081 HCH-Chr7:537653 HCH7g1262 HCH-Chr7:45486412 3.10E-136 dispersed
HCH7g1262 HCH-Chr7:45486412 HCH8g0793 HCH-Chr8:44526241 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1262 K11593 - csv:101221352 1868.2