Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1264 | ATGTCTACCATTTTGCATTCAAACTTGAAGCGCGTTGTGTTCTTACTCGACACTTCTGGTAAGAACACTGGGAATAGCATAGGTAAAACTAGATGGCAGTCTGCTTTCGTTATTATATATTGCTCTCGAGCTCTATTATCTTTACGGCAAAACACTTCTGTTAAGATGATCGAAAAGCCTCCGTCTCTAGATACCATTGTGGATATCGAGGAAAATGGCTGTTTCAAAATTGATAAAGTTTCTCTAGCTGATCTTGTAAAAGAAAAACGTCTGAAAGAGCTTCAAGATATGGAAGGAGTGCCTGGTGTTGCATCGGTTCTCCACACAGACGTTGAGCAAGGCATTGAAGGTGGCATTGAAGATATCGCCAGCAGAATTCGGGCATTTGGTTCCAATACCTACAAGAAGCCGCCTACAAAGAGCTTTTTTTACTATGTACTGGAAGCCTTCAAAGATCTGACCATTTTAATCCTTTTGGGTTGTGCTGCTCTCTCTCTTGGTTTTGGCATCAAACAGCATGGCCTGAAAGAAGGATGGTATGATGGTGGCAGCATTTCCATTGCAGTTATCATTGTCATTGTTTTCTCTGCTGTCAGTAATTACAGGCAGAATAGACAGTTTGATAAGTTATCAAAGATCAATGAAGACATCAAAATTGAAGTCGTTAGACGTGGAAAGCGATACAAAATTTCAATATTTGAAATCGTTGTTGGAGAGGTTGTTTGCTTAAAAATTGGAGATCAAGTTCCTGCAGATGGTTTGCTCTTAAACGGGCATTCGATGCTTGTAGATGAATCGAGCATGACAGGGGAAAGTGAGCAGGTAGAAATTGATGACAAACAACATCCGTTTTTGATTTCTGGTACCAAGGTTGTTGATGGCTATGGTCAAATGCTAGTCACTTCAGTTGGCATGAACACCACATGGGGTGAAATGATGAGCTCAATCAACCGAGATAATGCGGAAGAGACGCCTTTACAGGCTCGATTAAATAAGCTAACTTCATCAATAGGTAAAGTTGGTTTGACAGTTGCTTTCCTAGTTCTTGTGGTTCTCTTGGTTCGGTACTTCACGGGGAATTCATACGACGAGAATGGAAAACAAGAGTTCACTACTAGCAGAACCACTTCTGATGATATAGTAAATGCGGTGATAGGAATGGTGGCTGCTGCAGTAACCATTATCGTGGTTGCTATACCAGAAGGTTTGCCTTTGGCCGTCACCCTTACTCTTGCTTACTCCATGAAGAGAATGATGACTGACAATGCCATGGTCCGAAAACTATCAGCCTGCGAGACTATGGGTTCTGCCACCACCATTTGTACAGACAAGACAGGTACTCTCACTTTAAATAAGATGAAGGTGACAGAATTTTGGCTTGGAAAGGAATCTATGAAGACAGTTGGTTCCTCAATTTCTTCAACTATTCGTGAACTGATATATCAAGGAGTTTCTCTGAACACGACGGGCAGTGTTTACAACCCCAGTTCAGGATCTGAGATCGAGATCAGTGGAAGCCCAACTGAGAAAGCCATTCTTTCATGGGCAGTACTAGAGATGAACATGGATATGGACAAAATGATTCGAAGTTGTAAAATACTCCAAGTTGAGGCCTTTAATTCACAAAAGAAACGCAGCGGAGTTTTGATCAGAAAGAAGGAAGATAACAGCATCCATGTGCACTGGAAAGGAGCTGCAGAGATGATAGTCGCCATGTGCTCAAGGTACTATGATTGTTCGGGAAATATCAAAGATATAGATGATGGTGAAAGGGCGAGTTTTAATAATATTATTGAAGGTATGGCTGCTAGTAGCCTCAGGTGTATAGCTTTTGCACATAAACAGGTTAAAGAAGAAAAGCTTGAAGATGAAATTGTGCAGCAACCACTCAAAGAAAACGGCTTGACGCTCTTGGGATTGATTGGAATAAAAGACCCGTGTCGTCCTGGGGTGAAAAAAGCTGTTGAAGGTTGCCAACATGCCGGGATTGATATCAAAATGATCACTGGTGACAATATCTTCACAGCCAAGGCTATAGCCACGGAATGTGGGATTCTCAATCCAAATCATGACACCTCAAGTGAACTGGTAGTTGAAGGTGAGGAATTCCGAAACTTCACCCCAGAGGAAAGATTGGAGAAAGTCGAAAAAATCCGTGTAATGGCAAGATCGTCTCCCATGGATAAACTTCTCATGGTGCAGTGCTTAAAACAGAAAGGTCATGTAGTTGCAGTTACAGGAGATGGTACAAATGATGCTCCTGCACTAAAAGAAGCCGATATCGGACTTTCTATGGGGATTCAAGGAACTGAAGTAGCAAAAGAGAGTTCTGATATCGTCGTCTTGGACGACAACTTCTCTTCTGTCGTCACAGTTGTAGGATGGGGAAGATGTGTTTACAACAACATCCAAAAATTCCTTCAATTCCAGCTCACAGTCAATGTCGCCGCCCTTGTGATCAACTTCGTGGCAGCAGTTTCAGCAGGTGATGTTCCATTAACAGCAGTTCAATTACTATGGGTTAACTTAATCATGGACACTCTAGGTGCACTAGCACTAGCAACCGAACGACCCACGAAAGAGCTAATGAACAAACCGCCCGTGGGTCGTACCGAGCCGCTCATCACCAACATCATGTGGCGAAATCTACTAGCACAAGCTCTATATCAAATAACAATCCTATTAATCCTACAATTCAAAGGGATTTCTATATTTGGGGTTTCAGAGGCAGTAAAAGACACATTGATCTTCAATACATTTGTTCTATGCCAAGTATTCAATGAATTCAATGCACGAAAACTCGAAAAGAAGAACGTATTTAAAGGAATACACAAGAACAAGCTGTTCTTAGGGATTATTGGATTTACCATTATCCTTCAAGTGGTGATGGTGGAATTTTTGAAGAAATTTGCAGGAACTGTTAGATTAAATTGGCAGCAATGGATTGCTTGTGGTGGAATTGCAGCTGTATCATGGCCAATTGGATGGGCAGTTAAGTTTATACCTGTTCCAAAAAGACCAATCTTCAGTTATTTGAAGTGGAGGAAATAA | 3051 | 41.49 | MSTILHSNLKRVVFLLDTSGKNTGNSIGKTRWQSAFVIIYCSRALLSLRQNTSVKMIEKPPSLDTIVDIEENGCFKIDKVSLADLVKEKRLKELQDMEGVPGVASVLHTDVEQGIEGGIEDIASRIRAFGSNTYKKPPTKSFFYYVLEAFKDLTILILLGCAALSLGFGIKQHGLKEGWYDGGSISIAVIIVIVFSAVSNYRQNRQFDKLSKINEDIKIEVVRRGKRYKISIFEIVVGEVVCLKIGDQVPADGLLLNGHSMLVDESSMTGESEQVEIDDKQHPFLISGTKVVDGYGQMLVTSVGMNTTWGEMMSSINRDNAEETPLQARLNKLTSSIGKVGLTVAFLVLVVLLVRYFTGNSYDENGKQEFTTSRTTSDDIVNAVIGMVAAAVTIIVVAIPEGLPLAVTLTLAYSMKRMMTDNAMVRKLSACETMGSATTICTDKTGTLTLNKMKVTEFWLGKESMKTVGSSISSTIRELIYQGVSLNTTGSVYNPSSGSEIEISGSPTEKAILSWAVLEMNMDMDKMIRSCKILQVEAFNSQKKRSGVLIRKKEDNSIHVHWKGAAEMIVAMCSRYYDCSGNIKDIDDGERASFNNIIEGMAASSLRCIAFAHKQVKEEKLEDEIVQQPLKENGLTLLGLIGIKDPCRPGVKKAVEGCQHAGIDIKMITGDNIFTAKAIATECGILNPNHDTSSELVVEGEEFRNFTPEERLEKVEKIRVMARSSPMDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVVLDDNFSSVVTVVGWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSAGDVPLTAVQLLWVNLIMDTLGALALATERPTKELMNKPPVGRTEPLITNIMWRNLLAQALYQITILLILQFKGISIFGVSEAVKDTLIFNTFVLCQVFNEFNARKLEKKNVFKGIHKNKLFLGIIGFTIILQVVMVEFLKKFAGTVRLNWQQWIACGGIAAVSWPIGWAVKFIPVPKRPIFSYLKWRK | 1016 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 45540596 | 45543646 | - | evm.model.ptg000013l.1264 | HCH7g1264 | 548549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1264 | 1016 | Pfam | Cation transport ATPase (P-type) | 493 | 576 | - | - | |
| HCH7g1264 | 1016 | FunFam | Calcium-transporting ATPase | 196 | 317 | - | - | |
| HCH7g1264 | 1016 | Pfam | Cation transporting ATPase, C-terminus | 831 | 1001 | IPR006068 | - | |
| HCH7g1264 | 1016 | Pfam | haloacid dehalogenase-like hydrolase | 613 | 760 | - | - | |
| HCH7g1264 | 1016 | SUPERFAMILY | Calcium ATPase, transduction domain A | 218 | 315 | IPR008250 | - | |
| HCH7g1264 | 1016 | FunFam | Calcium-transporting ATPase | 641 | 791 | - | - | |
| HCH7g1264 | 1016 | NCBIfam | HAD-IC family P-type ATPase | 384 | 464 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH7g1264 | 1016 | NCBIfam | HAD-IC family P-type ATPase | 717 | 826 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH7g1264 | 1016 | PRINTS | H+-transporting ATPase (proton pump) signature | 778 | 803 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH7g1264 | 1016 | PRINTS | H+-transporting ATPase (proton pump) signature | 594 | 612 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH7g1264 | 1016 | PRINTS | H+-transporting ATPase (proton pump) signature | 746 | 762 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH7g1264 | 1016 | CDD | P-type_ATPase_Ca_PMCA-like | 122 | 879 | - | - | |
| HCH7g1264 | 1016 | SMART | Cation_ATPase_N_a_2 | 96 | 170 | IPR004014 | - | |
| HCH7g1264 | 1016 | SUPERFAMILY | HAD-like | 439 | 851 | IPR036412 | - | |
| HCH7g1264 | 1016 | Gene3D | - | 148 | 1000 | - | - | |
| HCH7g1264 | 1016 | Pfam | E1-E2 ATPase | 218 | 419 | - | - | |
| HCH7g1264 | 1016 | Gene3D | - | 451 | 646 | IPR023299 | GO:0000166(InterPro) | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 264 | 278 | - | - | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 770 | 782 | - | - | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 441 | 455 | - | - | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 661 | 671 | - | - | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 639 | 650 | - | - | |
| HCH7g1264 | 1016 | PRINTS | P-type cation-transporting ATPase superfamily signature | 746 | 765 | - | - | |
| HCH7g1264 | 1016 | SFLD | C1.7: P-type atpase like | 423 | 799 | - | - | |
| HCH7g1264 | 1016 | PANTHER | CATION TRANSPORTING ATPASE | 80 | 1003 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| HCH7g1264 | 1016 | Gene3D | - | 121 | 317 | - | - | |
| HCH7g1264 | 1016 | FunFam | Calcium-transporting ATPase | 451 | 646 | - | - | |
| HCH7g1264 | 1016 | Gene3D | - | 438 | 791 | IPR023214 | - | |
| HCH7g1264 | 1016 | SFLD | p-type atpase | 423 | 799 | IPR044492 | - | |
| HCH7g1264 | 1016 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 443 | 449 | IPR018303 | - | |
| HCH7g1264 | 1016 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 99 | 1004 | IPR023298 | - | |
| HCH7g1264 | 1016 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 75 | 1003 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| HCH7g1264 | 1016 | FunFam | Calcium-transporting ATPase | 763 | 1005 | - | - | |
| HCH7g1264 | 1016 | Pfam | Cation transporter/ATPase, N-terminus | 99 | 165 | IPR004014 | - | |
| HCH7g1264 | 1016 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 448 | 643 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0744 | HCH-Chr10:7031765 | HCH7g1264 | HCH-Chr7:45540596 | 0.00E+00 | dispersed | |
| HCH3g1300 | HCH-Chr3:49579841 | HCH7g1264 | HCH-Chr7:45540596 | 6.40E-96 | dispersed | |
| HCH7g0336 | HCH-Chr7:2376861 | HCH7g1264 | HCH-Chr7:45540596 | 4.40E-121 | dispersed | |
| HCH7g1264 | HCH-Chr7:45540596 | HCH9g1360 | HCH-Chr9:45094899 | 3.80E-231 | dispersed | |
| HCH10g0210 | HCH-Chr10:1702521 | HCH7g1264 | HCH-Chr7:45540596 | 3.60E-304 | transposed | |
| HCH4g1571 | HCH-Chr4:12260811 | HCH7g1264 | HCH-Chr7:45540596 | 1.00E-298 | transposed | |
| HCH10g0740 | HCH-Chr10:6982007 | HCH7g1264 | HCH-Chr7:45540596 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g1264 | K01537 | - | rcu:8280211 | 1439.48 |