Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1302 ATGAAGCAGCTTCATGATGATCAAGAGGAAACCAAAAGGCCACAGTATCCTCTAGATTCCACTTGTTACAAGATCATCGACGAAATCGGTGTCGGTGTCAGCGCGGTCGTGTACAAGGCCGTATGCATTCCGATGAACTCGACTGTGGTGGCGATCAAAGCAATCGATCTCGATCAATCCCGAGCTAATTTCGATGACATTAGAAGAGAAGCCAAGATTCTATCACTTCTTTCTCATCCAAACATCCTCAATTCCCACTGTTGTTTCACCGTTGATCAGCGCCTTTGGGTCGTTATGCCGTTTATGTCAGCCGGCTCTCTACAATCCATTATCTCATCATCATTTCCCAATGGTATATCGGAGCCCTGCATTGCCATAGTTCTCAAAGAAACACTAAATGCATTAGCTTATCTCCATGACCAAGGTCATCTCCATAGAGACATAAAAGCAGGCAACATTCTAATGGACTCAAACGGAACCGTTAAGCTAGCGGATTTTGGAGTATCGGCTTCCATATTCGAATCGATTTCTTCGATATCATCATCAGTAATGCTCAAGGATATCGCTGGAACGCCGTACTGGATGGCACCGGAAGTGATACATTCACATAAAGGATACAGTTTGAAAGCTGATATATGGTCATTTGGAATAACTGCATTGGAATTAGCCCATGGACGTCCTCCTTTATCTCATCTCCCTCCATCGAAATCTCTGTTTCTTAAAATCACTCGAGGCTTTCGATTCTCAGACTATGAGAAAGAGAACAACACCAAGAACAAATTCTCGAAAGCTTTCAAGGAAATGATCGCTGCCTGTCTCGATCAAGAACCATCGAAAAGACCTTGTGCTAAGAAACTTCTTAAACTTCCATTCTTCAAGAATTGCAAAAGCTTAGAATTCCTAGTAAAGACTGTGTTGCAAGGATTGCCAAGTGTGGAAGAGAGGTTCAAAATAGTGAAACTACAACGACTACCGTCGATGAAAACGGACGATGAAGACGAAGACGAAGATGAGCTGGAGAAGGAAATCATAAAACAAAGAAGGATAAGTGGATGGAACTTCAATGAGGAAGTGTTTGAACTCGATCCGGTCTTCCCGATAGGGAATTACGAACCGATCATCGAAGAGAAGAACAATGAAGAAGAAGGAGAAGGAGGAGAATTGGTTGTAGAAAAGGAGTCAATAGTGGGAGGGTTGATAGCATTGAAGAGAAGCTTGGATGAGCAGAGGAGGATGGTGGTGAATTTGATAGAGTTTTTGGAGGGAGAGAAAGATGGAGAGGGGAGAAAGGAGGAGGAGATGGGAAAAGTGATTGAGAGGATGATGAAGGAGTTGGAGAATGAGAGGAAGAGGAATTTGGAATTGGAAATGGAGTTGGAATTTCTTAGGCTTCAGATTTCTGGTGTCTATAATGGAGGAGGAACTGTCATTGAAAACTGA 1440 42.85 MKQLHDDQEETKRPQYPLDSTCYKIIDEIGVGVSAVVYKAVCIPMNSTVVAIKAIDLDQSRANFDDIRREAKILSLLSHPNILNSHCCFTVDQRLWVVMPFMSAGSLQSIISSSFPNGISEPCIAIVLKETLNALAYLHDQGHLHRDIKAGNILMDSNGTVKLADFGVSASIFESISSISSSVMLKDIAGTPYWMAPEVIHSHKGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLFLKITRGFRFSDYEKENNTKNKFSKAFKEMIAACLDQEPSKRPCAKKLLKLPFFKNCKSLEFLVKTVLQGLPSVEERFKIVKLQRLPSMKTDDEDEDEDELEKEIIKQRRISGWNFNEEVFELDPVFPIGNYEPIIEEKNNEEEGEGGELVVEKESIVGGLIALKRSLDEQRRMVVNLIEFLEGEKDGEGRKEEEMGKVIERMMKELENERKRNLELEMELEFLRLQISGVYNGGGTVIEN 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45928670 45930109 + evm.model.ptg000013l.1302 HCH7g1302 548587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1302 479 Coils Coil 438 465 - -
HCH7g1302 479 Gene3D Transferase(Phosphotransferase) domain 1 105 343 - -
HCH7g1302 479 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
HCH7g1302 479 Pfam Protein kinase domain 23 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1302 479 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524(InterPro)
HCH7g1302 479 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 381 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
HCH7g1302 479 ProSiteProfiles Protein kinase domain profile. 23 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1302 479 FunFam Serine/threonine-protein kinase BLUS1 12 101 - -
HCH7g1302 479 SMART serkin_6 23 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1302 479 SUPERFAMILY Protein kinase-like (PK-like) 16 307 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1302 HCH-Chr7:45928670 HCH9g0143 HCH-Chr9:820812 5.10E-85 dispersed
HCH6g1522 HCH-Chr6:48702494 HCH7g1302 HCH-Chr7:45928670 2.40E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81657 PF00069 Pkinase 5.50E-58 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1302 K08835 - csv:101215648 639.032