Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1306 ATGCTAAGACAACCCGACCACCACCGCGACGACAGCGGTGGTGGAAGCGGAAGTAGAGACGATGACGACGACGACGATCGCGATGAGCCTAAAGAAGGAGCTGTGGAACCTGGAACTAGAAGACCTAGAGGAAGACCACCGGGATCTAAAAATAAACCTAAACCACCGATTTTTGTTACTCGTGATAACCCTAACGCCCTCCGCAGCCATGTTTTGGAGGTTTCTGGCGGCTCCGATGTAGCGGAGTGTATCGCACAATTCGCTCGGCGACGGCAGCGAGGCGTTTGTGTTCTTAGTGGAAGTGGTTTAGTGGCTAACGTTGCCCTCAGGCAACCGGCGGCGCCCGGCTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTTTGTCTTTGACCGGAGCTTTTCTTCCCGGGCCGTCTCCCCCGGGATCCACCGGGTTGACGGTGTACTTATCCGGCGGTCAGGGACAGGTTGTCGGTGGGAGCGTCGTCGGGTCACTGGTGGCAGCCGGACCAGTAATGGTTATCGCGGCGACTTTTGCTAATGCGACGTATGAAAGGCTGCCTCTTGAAGATCAAGATGATCATGAAGTTGGGAGCACCGCTGCTGGACATGGCGGAGAGAGAAGCCCGCCGCTAGAAATTGGAGGAGGCGGAGGGGGAGGGCAGATGGCGGAACCGGCGATGCCGCTATACAACCTACTGCCGAATATGCAGCTTCCCGGCGGGGTTCAGCTCGGACACGATGCGTATGGCTATGTCCGGCCGCCGTACTGA 774 57.36 MLRQPDHHRDDSGGGSGSRDDDDDDDRDEPKEGAVEPGTRRPRGRPPGSKNKPKPPIFVTRDNPNALRSHVLEVSGGSDVAECIAQFARRRQRGVCVLSGSGLVANVALRQPAAPGSVMPLQGRFEILSLTGAFLPGPSPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEDQDDHEVGSTAAGHGGERSPPLEIGGGGGGGQMAEPAMPLYNLLPNMQLPGGVQLGHDAYGYVRPPY 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46002643 46003416 - evm.model.ptg000013l.1306 HCH7g1306 548591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1306 257 Gene3D - 67 197 - -
HCH7g1306 257 ProSiteProfiles PPC domain profile profile. 64 201 IPR005175 -
HCH7g1306 257 MobiDBLite consensus disorder prediction 1 16 - -
HCH7g1306 257 MobiDBLite consensus disorder prediction 1 64 - -
HCH7g1306 257 MobiDBLite consensus disorder prediction 190 221 - -
HCH7g1306 257 CDD DUF296 68 150 IPR005175 -
HCH7g1306 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 180 IPR005175 -
HCH7g1306 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 64 192 - -
HCH7g1306 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 251 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH7g1306 257 FunFam AT-hook motif nuclear-localized protein 67 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0503 HCH-Chr13:3538028 HCH7g1306 HCH-Chr7:46002643 8.60E-65 dispersed
HCH1g0439 HCH-Chr1:52797627 HCH7g1306 HCH-Chr7:46002643 2.30E-64 dispersed
HCH7g1306 HCH-Chr7:46002643 HCH7g1551 HCH-Chr7:47972397 8.00E-61 dispersed
HCH10g0700 HCH-Chr10:6411306 HCH7g1306 HCH-Chr7:46002643 2.30E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1306 - - - 0.0