Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g1306 | ATGCTAAGACAACCCGACCACCACCGCGACGACAGCGGTGGTGGAAGCGGAAGTAGAGACGATGACGACGACGACGATCGCGATGAGCCTAAAGAAGGAGCTGTGGAACCTGGAACTAGAAGACCTAGAGGAAGACCACCGGGATCTAAAAATAAACCTAAACCACCGATTTTTGTTACTCGTGATAACCCTAACGCCCTCCGCAGCCATGTTTTGGAGGTTTCTGGCGGCTCCGATGTAGCGGAGTGTATCGCACAATTCGCTCGGCGACGGCAGCGAGGCGTTTGTGTTCTTAGTGGAAGTGGTTTAGTGGCTAACGTTGCCCTCAGGCAACCGGCGGCGCCCGGCTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTTTGTCTTTGACCGGAGCTTTTCTTCCCGGGCCGTCTCCCCCGGGATCCACCGGGTTGACGGTGTACTTATCCGGCGGTCAGGGACAGGTTGTCGGTGGGAGCGTCGTCGGGTCACTGGTGGCAGCCGGACCAGTAATGGTTATCGCGGCGACTTTTGCTAATGCGACGTATGAAAGGCTGCCTCTTGAAGATCAAGATGATCATGAAGTTGGGAGCACCGCTGCTGGACATGGCGGAGAGAGAAGCCCGCCGCTAGAAATTGGAGGAGGCGGAGGGGGAGGGCAGATGGCGGAACCGGCGATGCCGCTATACAACCTACTGCCGAATATGCAGCTTCCCGGCGGGGTTCAGCTCGGACACGATGCGTATGGCTATGTCCGGCCGCCGTACTGA | 774 | 57.36 | MLRQPDHHRDDSGGGSGSRDDDDDDDRDEPKEGAVEPGTRRPRGRPPGSKNKPKPPIFVTRDNPNALRSHVLEVSGGSDVAECIAQFARRRQRGVCVLSGSGLVANVALRQPAAPGSVMPLQGRFEILSLTGAFLPGPSPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLEDQDDHEVGSTAAGHGGERSPPLEIGGGGGGGQMAEPAMPLYNLLPNMQLPGGVQLGHDAYGYVRPPY | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 46002643 | 46003416 | - | evm.model.ptg000013l.1306 | HCH7g1306 | 548591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g1306 | 257 | Gene3D | - | 67 | 197 | - | - | |
HCH7g1306 | 257 | ProSiteProfiles | PPC domain profile profile. | 64 | 201 | IPR005175 | - | |
HCH7g1306 | 257 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
HCH7g1306 | 257 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
HCH7g1306 | 257 | MobiDBLite | consensus disorder prediction | 190 | 221 | - | - | |
HCH7g1306 | 257 | CDD | DUF296 | 68 | 150 | IPR005175 | - | |
HCH7g1306 | 257 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 68 | 180 | IPR005175 | - | |
HCH7g1306 | 257 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 64 | 192 | - | - | |
HCH7g1306 | 257 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 21 | 251 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH7g1306 | 257 | FunFam | AT-hook motif nuclear-localized protein | 67 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0503 | HCH-Chr13:3538028 | HCH7g1306 | HCH-Chr7:46002643 | 8.60E-65 | dispersed | |
HCH1g0439 | HCH-Chr1:52797627 | HCH7g1306 | HCH-Chr7:46002643 | 2.30E-64 | dispersed | |
HCH7g1306 | HCH-Chr7:46002643 | HCH7g1551 | HCH-Chr7:47972397 | 8.00E-61 | dispersed | |
HCH10g0700 | HCH-Chr10:6411306 | HCH7g1306 | HCH-Chr7:46002643 | 2.30E-75 | wgd |
Pathway information
