Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1322 ATGGATCCATTAGAGGATCCAATTTCTTGGGATTTTTTCGATTACTCTTTGTTCGTCGGCGCCGACAATAACAACAACAACAACATTAACTTTAATAATTACAGTGATAGTGTTGTGGAAATTGATGTTTCATCTGGTTGTGTTTTGTCCGAAGAAAGTGAATGCTCCAGGAAGAGGGCACGAGATGGTTCGTATACTGGATTATCGTCTAAAGCGTGTCGCGAGAAGTTGCGGCGAGAACGATTGAATGATAAGTTTCTGGACTTGAGTTCTGCTTTGGAACCTGGCAGACCCTCCAAAACTAACAAACCAGCTATACTTGATGATGCCATTAGAGTCTTAAATCAACTAAGAAATGAAGCTGAAGAGCTCAAAGAAAGTAATGAAAAGTTGCGAGAAGAAGTCGAGAGTTTAAAGGCAGAGAAGAATGATTTACGGAAAGAGAAATCGATATTGAAGGAAGATAAAGAAAGGTTGGAGCAAAAGTTGAAAGCTATGGCCAACATGTCACCACCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGGTGCTGCTGGAGGGAAGATGGCCGTTTTTCCCAGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCGATCCATGATACGTCTCGGGATCACGAGCTTAGGCCCCCTGCTGCGTAG 672 43.01 MDPLEDPISWDFFDYSLFVGADNNNNNNINFNNYSDSVVEIDVSSGCVLSEESECSRKRARDGSYTGLSSKACREKLRRERLNDKFLDLSSALEPGRPSKTNKPAILDDAIRVLNQLRNEAEELKESNEKLREEVESLKAEKNDLRKEKSILKEDKERLEQKLKAMANMSPPGLIPGHPAAYHGAAGGKMAVFPSYGLIPMWQYLPPSIHDTSRDHELRPPAA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46133348 46135071 - evm.model.ptg000013l.1322 HCH7g1322 548607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1322 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 140 IPR036638 GO:0046983(InterPro)
HCH7g1322 223 SMART finulus 72 123 IPR011598 GO:0046983(InterPro)
HCH7g1322 223 Gene3D - 69 150 IPR036638 GO:0046983(InterPro)
HCH7g1322 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 117 IPR011598 GO:0046983(InterPro)
HCH7g1322 223 Coils Coil 107 169 - -
HCH7g1322 223 Pfam Helix-loop-helix DNA-binding domain 70 118 IPR011598 GO:0046983(InterPro)
HCH7g1322 223 CDD bHLH_AtILR3_like 71 146 - -
HCH7g1322 223 PANTHER BHLH TRANSCRIPTION FACTOR 31 223 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1152 HCH-Chr12:9614208 HCH7g1322 HCH-Chr7:46133348 6.90E-27 dispersed
HCH2g0758 HCH-Chr2:51219664 HCH7g1322 HCH-Chr7:46133348 1.20E-23 dispersed
HCH7g1322 HCH-Chr7:46133348 HCH6g0752 HCH-Chr6:42023031 1.20E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33923 PF00010 HLH 5.70E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1322 - - - 0.0