Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1326 | ATGGAAGATTCTCGGAGAGGTAAGGAGCAGAAGCAAGGTGAGGGGAGGGATGATGTCAGGTACCGTGGCGTGAGGCGGCGGCCGTGGGGGAAATATGCAGCGGAGATTCGAGATCCATCAAGGAACGGGGCTAGGCAATGGCTGGGAACATACGACACGGCGGAGGAAGCGGCGAGGGCGTATGATCGGATGGCATTTAACCTGAAAGGTCATCTTGCCATGCTGAATTTTCCTAGTGAATATTACTCTAGGGTTTTGGGTTCTCCTCCTCATCCTCCTCACTTAATGTTTTCGGCTGCCAATCACGGCGGCGTTGTTGCGACTAAAAACAAGGGTTTCGAGAGAGGGGGAGGCTCATGTTCTACAAGTCATACTCATGGAAATCAAGATCAAAGGCAAGTTTTTGAGTTTGAGTATTTGGATGACAAGGTTTTAGAGGAACTTCTTGAACAGGAAGAGGAGAAGAAGAAGAGAAACAAATAA | 483 | 48.86 | MEDSRRGKEQKQGEGRDDVRYRGVRRRPWGKYAAEIRDPSRNGARQWLGTYDTAEEAARAYDRMAFNLKGHLAMLNFPSEYYSRVLGSPPHPPHLMFSAANHGGVVATKNKGFERGGGSCSTSHTHGNQDQRQVFEFEYLDDKVLEELLEQEEEKKKRNK | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 46165342 | 46165824 | - | evm.model.ptg000013l.1326 | HCH7g1326 | 548611 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1326 | 160 | CDD | AP2 | 20 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | FunFam | Ethylene-responsive transcription factor 2 | 20 | 80 | - | - | |
| HCH7g1326 | 160 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | PRINTS | Ethylene responsive element binding protein signature | 21 | 32 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | ProSiteProfiles | AP2/ERF domain profile. | 20 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | SUPERFAMILY | DNA-binding domain | 20 | 79 | IPR016177 | GO:0003677(InterPro) | |
| HCH7g1326 | 160 | PANTHER | DNA-BINDING DOMAIN | 8 | 121 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
| HCH7g1326 | 160 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| HCH7g1326 | 160 | SMART | rav1_2 | 20 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | Pfam | AP2 domain | 20 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| HCH7g1326 | 160 | Gene3D | AP2/ERF domain | 19 | 79 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH7g1326 | HCH-Chr7:46165342 | HCH7g1792 | HCH-Chr7:49504042 | 7.80E-22 | dispersed | |
| HCH7g1325 | HCH-Chr7:46160915 | HCH7g1326 | HCH-Chr7:46165342 | 1.90E-30 | tandem | |
| HCH7g1326 | HCH-Chr7:46165342 | HCH7g1327 | HCH-Chr7:46177944 | 3.30E-20 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33925 | PF00847 | AP2 | 3.70E-15 | CL0081 | HCH | TF |
Pathway information