Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1327 ATGGAATCCTCCTCCGGCTTCTTCTCTCCGGTCTCCGATTTCTCATCGGAATCGTCTTCTTTCGGTTCTCCAGAATGCTTTCCCTGGGAAGACGGTCTTAATTTCGATCACAATTTCAATTTCCTTCCTTTCAATGAAAATGACTCCGGCGAAATGTTTCTCTACGGATTACTTTCCGAGGCATCGTCCGACACCGGCACCGCTACCGCTACCGATATCGGTACCGAAACCCGAATCAAGGAAGAAGAAGTTAATTCCATCAGCAACGAAAATCCCATGAAGAATAATCATAACAACAACAAAGCTTACAGAGGAGTTCGCCGGCGGCCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCCACGAGAAATGGAGTAAGGGTTTGGTTGGGAACTTTTGATAGCGCCGAAGCTGCGGCTTTAGCTTATGATCAGGCAGCTTTTTCCATGAGGGGTACGTCGGCGATTCTTAATTTTCCGGTGGAGAGAGTCAGGGAGTCATTAAAAGAAATGAACAACGGCGGCGGCGGTGGTTTCGTTGAAGACGGCGGGTCTCCGGTGGTGGCTTTGAAAAGAAAACATTCAATCAGAAGGAAATCAACAAGTAAGAAAAGTAAAGAGAGGGACTTGAGGATTAAAAATGTGATGGTTTTGGAAGATTTAGGAGCTGATTATTTGGAAGAACTTTTGGGTTATTCTCAAATTGAGAATTCTTATTTAAATCAACAATAA 732 44.81 MESSSGFFSPVSDFSSESSSFGSPECFPWEDGLNFDHNFNFLPFNENDSGEMFLYGLLSEASSDTGTATATDIGTETRIKEEEVNSISNENPMKNNHNNNKAYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFSMRGTSAILNFPVERVRESLKEMNNGGGGGFVEDGGSPVVALKRKHSIRRKSTSKKSKERDLRIKNVMVLEDLGADYLEELLGYSQIENSYLNQQ 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46177944 46178675 + evm.model.ptg000013l.1327 HCH7g1327 548612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1327 243 Gene3D AP2/ERF domain 101 162 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 SUPERFAMILY DNA-binding domain 102 162 IPR016177 GO:0003677(InterPro)
HCH7g1327 243 Pfam AP2 domain 102 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 PANTHER DNA-BINDING DOMAIN 77 202 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
HCH7g1327 243 CDD AP2 103 161 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 SMART rav1_2 102 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH7g1327 243 FunFam Ethylene-responsive transcription factor 2 101 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0960 HCH-Chr14:37077469 HCH7g1327 HCH-Chr7:46177944 9.90E-28 dispersed
HCH6g1505 HCH-Chr6:48614265 HCH7g1327 HCH-Chr7:46177944 1.60E-60 dispersed
HCH7g1325 HCH-Chr7:46160915 HCH7g1327 HCH-Chr7:46177944 3.60E-21 dispersed
HCH7g1327 HCH-Chr7:46177944 HCH7g1792 HCH-Chr7:49504042 8.50E-20 dispersed
HCH7g1326 HCH-Chr7:46165342 HCH7g1327 HCH-Chr7:46177944 3.30E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33926 PF00847 AP2 2.50E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1327 K14516 - csv:101210326 243.047