Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1352 ATGAGAATAAAGGGATGGATAAATGAGCGAATTTTTGGCCTTAAGAGTAAATTGAGGACGATGATCAATTGTATTTGTTCAGGGGACCAGTTAAGAGTAGATGAACATGAACTGATGCATTCATCGGATTCACTGGCGACTCGAGACTATTCGGCCAGTGGTTTTTCATCCCGTACCGGGGAGGTGGAAACAAAGGTGGATAATGGCAACATTGAAGAAGCTGAATCGACTCTTCGTGAGAGTGGTTATCTGAACTATGAGGAAGCAAGAGCTTTACTCGGAAGACTAGAGTTTCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTGATTTCCAGGATAAAGTTTTCCATTTCTACGAGATATGAACAAAGTAGACGTCCCCCGCAAAGCGATGTCGTGCCTACTATGTCTATGCACGCCATTAGTCTGCTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTGCAGGGTCTAGGAAGGTTTGTAGAGGCAGCCAAATCATGCAAACTAATTTTGGACACTGTCGAATCTGCATTACCGGAAGGCTTACCTGAAGACTTCGCTATTGATTGTAAATTGCAAGAGACGCTAACGAATGCGGTTGAATTGCTTCCAGAACTGTGGAAGTCTGCCGGGTCTCCTGATGAATCTATCTTGTCTTATAGGCGTGCCCTTCTCTATCAATGGAATCTGGATATCAAAACCAGAGCAAAAATAGAAAAAGAATTTGCCATTTTTCTTGTGTACAGTGGTTGTGATGCAAGTCCTCCAAACCTCCGTTCACAGATGGAAAGCTCCTTTGTGCCAAAAAATAATATGGAGGAGGCCATTCTTCTGTTAATGACTCTCATCAGAAAATATATTCTTGGTTCGATTGTATGGGATCCGTCAATAATTGAGCATCTTTCGTTCGCAATGTCAGTTTCCGGTGAATTCGGTGCTCTAGCACATGAGGTTGAACAATTAGCACCAGGAGTAATAGGAAGAAAAGAAAAGTATTGCACTCTAGCTCTCTGCTACTATGGGGAGGGTAAAAACTTGGTTGCTTTGAATCTTTTGAAGAACTTCTTAAATAACGTAGAGAATGTCGACTGTCGACTGGAATTATTGTTGGCTTCAAAGCTCTGTGGAGAAAATTCGGTTTTTCTTGATGAGGGGATGGATTACACTGTGAAAGTGCTTTCTGAATTGCATGGAAAATGCATCCAGATGGTTAGTGTTGCTAATTGCTTGCTTGGTGTGTTGTTGTCAGCTAAATCCAGATCAGTTGTTTCCGACTTTCAGAGAATTTCGAAGCAGTCGGAAGCGCTCAAGGCACTACAAACTGCTGAGAAGCAGATGGTACAAAGAGATCCGTTTATTGTTTATCATCTATGTCTTGAATATGCTGAGCAGAGGAAGTTGGATATTGCTCTATATTATGCAAAACAGCTAGTAAAACTCGAGGTTGGCTCCAATGTGAAGTCTTACATCCTCTTGGCTCGAATATTGTCTGCGAAGAAACGTTTCGTGGATGCGGAGACTGTACTCAATGCTGCTCTTGAGCAGACTGGGAAATGGGAACAGGGGGAGCTCTTGCGACTTAAAGCTAAGATCCAGATTGCACAGGGCCAGTTGAAGAATGGTATAGAAACATATAGCCATCTTCTTGCCGTAATTCAAGTCCGGACCAAAAGTAGTGGTGTCGGGAAGGTGCTTTCAATGAACATGACAAACTCTGATAGAATTCTGGAAATGGAAACATGGCATGATTTAGCTAATATATACACAAGCTTATCTCACTGGAGGGATGCTGAGGTCTGTCTATCAAAATCTCAGGCAATAAATCCGTATTCTGCTTCGAGATGGCATTCCGCAGGTTTACTTTACGAGTCGAAGGATCTTCCGCAAGACGCCCTGCAAGCATACAACAGAGCATTGGAGATCGAACCTGGTCATGTTCCCAGTTTGATATCCACTGCCTGTCTTCTCCAAAAGCTAGGCGGCACTCAGTCATTCCCTGTTGTAAGAAGCTTGCTCACCGATGCGCTTCGACTTGACCGAGCAAATCCTTCTGCATGGTACAATCTTGGGCTGGTCTATAAAGCCAACGTTCAGGCATCAGCGGTGGAGGTTGCTGAATGCTTTGAAGCTGCAGCTCTACTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2205 43.08 MRIKGWINERIFGLKSKLRTMINCICSGDQLRVDEHELMHSSDSLATRDYSASGFSSRTGEVETKVDNGNIEEAESTLRESGYLNYEEARALLGRLEFQKGNIEAALHVFEGIDIAAVISRIKFSISTRYEQSRRPPQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESALPEGLPEDFAIDCKLQETLTNAVELLPELWKSAGSPDESILSYRRALLYQWNLDIKTRAKIEKEFAIFLVYSGCDASPPNLRSQMESSFVPKNNMEEAILLLMTLIRKYILGSIVWDPSIIEHLSFAMSVSGEFGALAHEVEQLAPGVIGRKEKYCTLALCYYGEGKNLVALNLLKNFLNNVENVDCRLELLLASKLCGENSVFLDEGMDYTVKVLSELHGKCIQMVSVANCLLGVLLSAKSRSVVSDFQRISKQSEALKALQTAEKQMVQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVKLEVGSNVKSYILLARILSAKKRFVDAETVLNAALEQTGKWEQGELLRLKAKIQIAQGQLKNGIETYSHLLAVIQVRTKSSGVGKVLSMNMTNSDRILEMETWHDLANIYTSLSHWRDAEVCLSKSQAINPYSASRWHSAGLLYESKDLPQDALQAYNRALEIEPGHVPSLISTACLLQKLGGTQSFPVVRSLLTDALRLDRANPSAWYNLGLVYKANVQASAVEVAECFEAAALLEESAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46367125 46370307 + evm.model.ptg000013l.1352 HCH7g1352 548637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1352 734 Pfam Tetratricopeptide repeat 624 654 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 SUPERFAMILY TPR-like 533 704 IPR011990 GO:0005515(InterPro)
HCH7g1352 734 SUPERFAMILY TPR-like 460 560 IPR011990 GO:0005515(InterPro)
HCH7g1352 734 Gene3D Tetratricopeptide repeat domain 573 731 IPR011990 GO:0005515(InterPro)
HCH7g1352 734 Gene3D Tetratricopeptide repeat domain 61 568 IPR011990 GO:0005515(InterPro)
HCH7g1352 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 SMART tpr_5 496 529 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 SMART tpr_5 154 187 IPR019734 GO:0005515(InterPro)
HCH7g1352 734 PANTHER PROTEIN NPG1 14 734 IPR043376 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0914 HCH-Chr12:6178190 HCH7g1352 HCH-Chr7:46367125 3.10E-171 transposed
HCH4g0584 HCH-Chr4:3849293 HCH7g1352 HCH-Chr7:46367125 9.80E-149 transposed
HCH5g0114 HCH-Chr5:704421 HCH7g1352 HCH-Chr7:46367125 2.80E-239 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1352 K21843 - csv:101206105 1173.69