Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1382 ATGGCTGGTCAAGCAAGTCTAGTGGTTGGATCTCATGTTTGGATCGAGGATCCTGAGGTAGCTTGGATAGATGGGGAAGTAGTGGAAGTTAATGGTGAAGATATCACAGTAAACTGTACATCAGGGAAGACCGTCGAGGTTAAATTGTCAAATGTCAATCCGAAGGATCCCGAATTTCCTCCATGTGGTGTAGATGATATGACAAGACTAGCTTATCTGCATGAGCCAGGGCTTCTACAAAACTTAAAATGTCGTTATGACATTAATGAAATTTATACCTATACTGGAAGTATACTAATAGCTGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATATAAAGGTGCAGCGCTAGGGGAGCTGAGCCCACATCCTTTTGCCATTGCGAATTCTGCTTATAGGCTCATGATCAATGAGGGTATCAGTCAGGCAATTTTGGTTAGTGGGGAAAGCGGAGCTGGTAAAACAGAGAGTACTAAGATGCTTATGCACTATCTTGCCTATGTTGGAGGGCGTGTTGGAGTAAAGGCTGCGGCCGGGGGACGGTCTGTTGAGCAGCAAGTCCTAGAGTCCAACCCTGTTCTTGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAACTCAAGCCGGTTTGGTAAATTTGTGGAGATCCAGTTTGACCAGAACGGGAGAATCTCAGGCGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGAAATTATCATTGCTTTTATATGCTGTGCGCTGCACCAACAGAGGATATTGAAAAGTATAAACTAGGGAAGCCAACAACATTTCATTATCTCAATCAATCTAATTGCTACGAACTTGATGGAGTGGATGATTCCAAGGAGTATCATTCTACAAGGAAAGCTATGGGTGTTGTTGGAATAAGTACTAGTGAGCAGGATGCAATATTTCGAGTTGTGGCTGCGATACTTCATCTGGGAAATGTTGAGTTTGCAAAGGGGGAGGATGCAGATTCTTCTGAACCTAAGGATGACAAATCTCGGTTCCACCTCAAAATGGCAGCAAAATTATTCATGTGTGATGAGAAGTCTCTTGAAGATTCCATGTGTAGTCGCGTGATAGTGACACGTGATGAAACCATAACAAAATGTCTTGATCCAGAATCTGCAACCGTTAGTCGGGATGCTTTAGCCAAGATAGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTGATTCAAAGAACTTAATTGGGGTTCTGGATATCTATGGGTTTGAAAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTTTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGATTGGAGTTATATTGAATTTATTGATAATCAGGATATTCTTGATCTCATTGAGAAGAAACCTGGTGGTGTCATTGCTCTTCTGGATGAGGCTTGCATGTTTCCAAGATCCACACATGAGACTTTTGCACAGAAACTATATCAAACTTTTAAGGACCACAAGCGCTTTAGCAAGCCAAAATTGTCACAAACGGACTTCACAATTTGTCATTATGCTGGTGATGTTACTTACCAAACTGAATACTTCTTGGACAAAAACAAAGATTATGTTGTTGCAGAGCATCAAGCGCTGTTGAGTGCTTCTACGTGCACGTTCGTTTCAGGGTTGTTCCCTCCTTTACCTGAGGAATCTTCTAAATCATCTAAGTTCTCATCAATAGGATCGCGATTTAAGACACAACTTCAGTCTTTGCTTGAGACACTAAATGCCACCGAGCCACACTACATACGCTGCGTAAAGCCAAATAACCTTCTTAAGCCAGCCATGTTTGAGAATAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTGATGGAAGCAATCAGGATAAGCTGTGCTGGATATCCCACTAGGAAGATATTTGATGAATTTATTCGTCGGTTTAGTATCTTGGCACCTGATGTTTTGAATGGGAGCTGTGATGAAGTCACTGCATGTAAGAGGCTTTTGGATAAGGTTAACCTTAAAGGGTATCAGATTGGTAAAACCAAAGTATTTCTTAGAGCTGGTCAAATGGCAGAATTAGATGCTAGCCGAAGTGTGGTCTTGGGAAGATCTGCTATTATTATTCAAAGGAAATTTCGCTCATATCTGGGACGCAAAATCTTCATTTTGCTGCGACTTTCTGCTGTGCAAATCCAAACCATATGTAGAGGGCAAGTTGCACGCCAACAGTATGCAAACATCAGAAGGGAAGCTGCTTCTATCAGACTCCAGAAGAATTGGCGCATGTTTTTTTCCCGATGTTGCTATAAAAAGTTATGTGCTTCAGCTATAGCTATTCAAGCTGGTATCCATGGTATGGTTGCTCGTAGAGAGCTTAAGTTTAGGAGGCAGACAAGAGCTGCAATTATCATTCAGAGTCAATTTCGGCAACACCTGGCCCGTAATCAGTATCTGCGGATAAGGAAAGCTGCAATTGCTACGCAATGTGCTTGGAGAGGGAAAGTTGCACGCAGAGAACTTCGGAAGCTTAAAGCGGCTGCTAAAGAAACTGGTGCTCTCCAAGCTGCTAAAAATAAGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGGATGAGGGCTGATATTGAGGAGGCCAAAACTCAGGAAAACACAAAATTGCATTCTGCTTTCCAAGAAATGCAAATTCAATTTCAGGAAACAAAAGCACTGCTTATTAAGGAACGTGATGCTGCAAAGGAAGTTGTTGAGCATGTACCGGTCATACAGGAGGTTCCTGTTGTTGATCACGAACTGATCAATAAGCTAACTGCTGAAAATGAACAACTGAAGGCTCTCGTCAATTCTCTGGAAACTAAAATTGATGAAACAGAAAAGAAATTTGAAGAAAGTACCAGACTGAGTGAAGAGCGGCTGAAGCAGGCTTTGGATGCAGAGTCAAAGATTATAGAATTAAAGACTTCCATGCAAAGGCTTGAGGAAAAGTTATCTGACATGGAAACCGAGGACCAAATTCTGAGGCAGCAAGCACTACTAAATTCTTCTTCAAGAAAAATGTCTGAACATTTAACAATGGCAGCCAATCAGCCTTTGGAAAATGGCCACCATGAATTACTAAGCAGTGCACCGTCAAAAAAGTTTGGTACAGATTCTGATGCTAAATTGAGGAGATCCCAAGTTGAAAGGCAGCATGAGAGTGTAGATGCTCTTATGAAATGCCTGACACAGGATCTTGGGTTCAGTGAGGGGAAACCTGTTGCAGCTTTTACCATATATAAATCTCTTCTCCATTGGAGGTCATTTGAAGCAGAAAAAACAAGTGTATTTGACCGGCTTATTCAGCTGATTGGTTCTGCAATTGAGAATCAGGATGATAATGACCATATGGCTTATTGGTTATCCAATTCAACTACATTGTTGTTTCTTCTCCAGAAGAGTTTAAAAGCCTCTGGTACAACTGCACCACGGAAGCCTCCTACCCCAACATCATTGTTTGGGCGGATGACCCAAGGCTTCCGTTCATCTTCTGCCAACCTTTCAGTTGATGTAGTGCGGCAGGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTTACAGCATATGTAGAAAAGATATATGGAATAATTCGAGACAATTTAAAGAAAGAATTGTCGCCATTGCTTTCATCTTGTATCCAGGCTCCCAGAACTTCAAGAGGAAGTATTTTAAAATCATCTGGACAGACAAATAGCAGTAGCACTCCTGCTAGTCCTTGGTTCAGCATCATTGAGAATCTTAATGATTTTCTTTATAGACTGAAGGGAAATTTTGTGCCTTCTATTTTGATTCAGAGGATATTCACTCAGGTTTTCTCATATATCAATGTACAGCTCTTCAATAGTCTACTACTTCGCCGCGAGTGCTGCACGTTTAGCAATGGAGAATATGTGAAGTCAGGGTTGGCTGAATTCGAGCTTTGGTGTTGCCAATCAAAAGAAGAGTATGCTGGATCATCATGGGATGAGCTAAAACACGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGACATTACAAATGACCTCTGTCCAATATTGAGTGTTCAGCAGCTTTATAGAATATGCACTCTTTATTGGGACGACAATTACAATACTAGGAGTGTAGCTCCTGATGTTATTTCTAGCATGTCGATTCTGATGACTGACGATTCGGATGAAGATAGTAATTCCTTTTTGTTGGATGACAATTCCAGTATACCTTTCTCAGTTGAAGACATATCCAGTTCCCTGCAAGAAAAGAATTTATCAGATATAAAGCATCCTGCAGAACTGCTCGAGAATCCGGCCTTCCAATTTTTACTGGATTAA 4506 40.81 MAGQASLVVGSHVWIEDPEVAWIDGEVVEVNGEDITVNCTSGKTVEVKLSNVNPKDPEFPPCGVDDMTRLAYLHEPGLLQNLKCRYDINEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKGAALGELSPHPFAIANSAYRLMINEGISQAILVSGESGAGKTESTKMLMHYLAYVGGRVGVKAAAGGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQNGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEDIEKYKLGKPTTFHYLNQSNCYELDGVDDSKEYHSTRKAMGVVGISTSEQDAIFRVVAAILHLGNVEFAKGEDADSSEPKDDKSRFHLKMAAKLFMCDEKSLEDSMCSRVIVTRDETITKCLDPESATVSRDALAKIVYSRLFDWIVDKINNSIGQDPDSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDILDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFKDHKRFSKPKLSQTDFTICHYAGDVTYQTEYFLDKNKDYVVAEHQALLSASTCTFVSGLFPPLPEESSKSSKFSSIGSRFKTQLQSLLETLNATEPHYIRCVKPNNLLKPAMFENNNVLQQLRCGGVMEAIRISCAGYPTRKIFDEFIRRFSILAPDVLNGSCDEVTACKRLLDKVNLKGYQIGKTKVFLRAGQMAELDASRSVVLGRSAIIIQRKFRSYLGRKIFILLRLSAVQIQTICRGQVARQQYANIRREAASIRLQKNWRMFFSRCCYKKLCASAIAIQAGIHGMVARRELKFRRQTRAAIIIQSQFRQHLARNQYLRIRKAAIATQCAWRGKVARRELRKLKAAAKETGALQAAKNKLEKQVEELTWRLQLEKRMRADIEEAKTQENTKLHSAFQEMQIQFQETKALLIKERDAAKEVVEHVPVIQEVPVVDHELINKLTAENEQLKALVNSLETKIDETEKKFEESTRLSEERLKQALDAESKIIELKTSMQRLEEKLSDMETEDQILRQQALLNSSSRKMSEHLTMAANQPLENGHHELLSSAPSKKFGTDSDAKLRRSQVERQHESVDALMKCLTQDLGFSEGKPVAAFTIYKSLLHWRSFEAEKTSVFDRLIQLIGSAIENQDDNDHMAYWLSNSTTLLFLLQKSLKASGTTAPRKPPTPTSLFGRMTQGFRSSSANLSVDVVRQVEAKYPALLFKQQLTAYVEKIYGIIRDNLKKELSPLLSSCIQAPRTSRGSILKSSGQTNSSSTPASPWFSIIENLNDFLYRLKGNFVPSILIQRIFTQVFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAEFELWCCQSKEEYAGSSWDELKHVRQAVGFLVIHQKSRISYDDITNDLCPILSVQQLYRICTLYWDDNYNTRSVAPDVISSMSILMTDDSDEDSNSFLLDDNSSIPFSVEDISSSLQEKNLSDIKHPAELLENPAFQFLLD 1501
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 46587930 46605426 + evm.model.ptg000013l.1382 HCH7g1382 548667
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1382 1501 PANTHER MYOSIN 834 1446 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
HCH7g1382 1501 Gene3D - 671 737 - -
HCH7g1382 1501 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 PRINTS Myosin heavy chain signature 486 514 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 PRINTS Myosin heavy chain signature 200 227 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 Pfam IQ calmodulin-binding motif 789 808 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 Pfam IQ calmodulin-binding motif 765 782 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 Pfam IQ calmodulin-binding motif 741 759 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 Pfam IQ calmodulin-binding motif 836 855 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 Pfam IQ calmodulin-binding motif 859 879 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 809 831 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 786 808 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 761 783 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 738 760 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 SMART iq_5 857 879 IPR000048 GO:0005515(InterPro)
HCH7g1382 1501 Gene3D Myosin VI head, motor domain, U50 subdomain 316 605 - -
HCH7g1382 1501 ProSiteProfiles Myosin motor domain profile. 62 736 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 FunFam Myosin heavy chain 256 311 - -
HCH7g1382 1501 Pfam Myosin head (motor domain) 64 724 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 ProSiteProfiles Dilute domain profile. 1153 1448 IPR002710 -
HCH7g1382 1501 CDD MYSc_Myo11 76 724 IPR036018 -
HCH7g1382 1501 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 Pfam Myosin N-terminal SH3-like domain 9 52 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 FunFam Myosin 2 316 432 - -
HCH7g1382 1501 Pfam DIL domain 1324 1428 IPR002710 -
HCH7g1382 1501 Coils Coil 881 915 - -
HCH7g1382 1501 Gene3D - 11 55 IPR008989 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0051015(InterPro)
HCH7g1382 1501 SMART MYSc_2a 56 737 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
HCH7g1382 1501 Gene3D Kinesin motor domain 65 666 IPR036961 -
HCH7g1382 1501 ProSiteProfiles IQ motif profile. 787 816 - -
HCH7g1382 1501 Gene3D - 256 314 - -
HCH7g1382 1501 Gene3D - 443 627 - -
HCH7g1382 1501 CDD MyosinXI_CBD 1104 1470 IPR037975 GO:0007015(InterPro)
HCH7g1382 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 891 IPR027417 -
HCH7g1382 1501 FunFam unconventional myosin-Va 837 885 - -
HCH7g1382 1501 Coils Coil 976 1010 - -
HCH7g1382 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 790 IPR027417 -
HCH7g1382 1501 ProSiteProfiles IQ motif profile. 812 839 - -
HCH7g1382 1501 ProSiteProfiles IQ motif profile. 762 791 - -
HCH7g1382 1501 Gene3D - 739 788 - -
HCH7g1382 1501 Gene3D - 789 836 - -
HCH7g1382 1501 Gene3D - 837 886 - -
HCH7g1382 1501 Coils Coil 1018 1052 - -
HCH7g1382 1501 ProSiteProfiles IQ motif profile. 835 864 - -
HCH7g1382 1501 ProSiteProfiles IQ motif profile. 858 887 - -
HCH7g1382 1501 SMART DIL_2 1323 1430 IPR002710 -
HCH7g1382 1501 FunFam Class V myosin 443 587 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0507 HCH-Chr4:3321214 HCH7g1382 HCH-Chr7:46587930 0.00E+00 dispersed
HCH5g0949 HCH-Chr5:8205255 HCH7g1382 HCH-Chr7:46587930 0.00E+00 dispersed
HCH5g1301 HCH-Chr5:49021201 HCH7g1382 HCH-Chr7:46587930 0.00E+00 dispersed
HCH7g1382 HCH-Chr7:46587930 HCH8g0621 HCH-Chr8:42990089 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1382 K10357 - csv:101221506 2504.17