Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1401 ATGGCGATATCTGGAAGATGGATTCACTTGCTTCTAATGGTGGTTTTAATGCTCTTCGTTCCCACAATTGCCAGAGTTCCCAAGGACCAGATTCCTCAGACCAAGGATGGGGTTACTGAGAATGAGATATTGCAAAGCTCAAGCAATTCAACAATGGCAACAAGGTTGGCTGAGCCTGAAGATCTCAACAATAAGCATGCAGTGGAAAATCCAGAAGAGATTGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCAAGGAGGGAGCTCGGTTTCTTCTCGTGTGGGACCGGCAATCCTATCGACGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAGCGTCTTGCGGATTGTGGCATTGGTTTCGGGCGGAATGCTATCGGTGGTCGTGATGGACGCTTCTATTACATCACTGATTCGGGCGACGATAACCCTGTCAACCCAATGCCGGGCACTTTGCGACATGCTGTCATTCAGGATGAGCCTCTGTGGATTGTGTTCAAAAGGGACATGGTGATACAATTGAAACAAGAGCTCATCATGAATAGTTTCAAGACCATTGATGCTCGTGGAGTCAATGTGCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACTAATGTTATTATCCATGGTTTGAACATTCATGACTGCAAGCCTACTGGAAATGCCATGGTGAGGAGCTCACCCAATCATTTTGGATGGAGAACAATGGCCGATGGCGATGCGATTTCGATTTTCGGGTCCAGTCATATTTGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACAGCAATTACCATTTCCAACAATTACTTCACTCACCACAATGAGGTTATGTTACTGGGGCACAGTGATTCTTATGTGAGAGATAAACAAATGCAAGTGACTATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTCGACACGGATACTTCCACGTGGTGAACAATGATTATACACATTGGGAGATGTATGCCATTGGCGGAAGCGCAGACCCAACCATCAACAGCCAGGGTAATAGATATGCCGCTCCAACCAATCCTTTTGCAAAAGAGGTGACTAAGAGGGTTGAAACAGCAGAAAGTCAGTGGAAGGGCTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCTTTCTTCATTCCATCTGGTGCAGGGGCTTCTGCAAGCTATGCCAGAGCCTCCAGTTTGGGAGCTAAATCTTCATCCATGGTTGCTTCCATTACATCTGGTGCTGGTGCACTCTCCTGCCGCCGAGGCCATGCCTGCTAG 1347 47.07 MAISGRWIHLLLMVVLMLFVPTIARVPKDQIPQTKDGVTENEILQSSSNSTMATRLAEPEDLNNKHAVENPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYYITDSGDDNPVNPMPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNVIIHGLNIHDCKPTGNAMVRSSPNHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKSSSMVASITSGAGALSCRRGHAC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46751094 46755068 - evm.model.ptg000013l.1401 HCH7g1401 548686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1401 448 SUPERFAMILY Pectin lyase-like 76 443 IPR011050 -
HCH7g1401 448 Gene3D - 99 441 IPR012334 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
HCH7g1401 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
HCH7g1401 448 FunFam Pectate lyase 99 441 - -
HCH7g1401 448 Pfam Pectate lyase 186 363 IPR002022 -
HCH7g1401 448 SMART amb_all 174 371 IPR002022 -
HCH7g1401 448 PANTHER PECTATE LYASE 18-RELATED 20 445 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0701 HCH-Chr1:55861148 HCH7g1401 HCH-Chr7:46751094 3.40E-156 dispersed
HCH3g0395 HCH-Chr3:2574366 HCH7g1401 HCH-Chr7:46751094 2.60E-162 dispersed
HCH4g0072 HCH-Chr4:395562 HCH7g1401 HCH-Chr7:46751094 7.10E-173 dispersed
HCH7g1401 HCH-Chr7:46751094 HCH9g0554 HCH-Chr9:3632306 1.50E-147 dispersed
HCH5g0167 HCH-Chr5:965687 HCH7g1401 HCH-Chr7:46751094 1.00E-209 wgd
HCH6g1437 HCH-Chr6:48126885 HCH7g1401 HCH-Chr7:46751094 7.40E-213 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1401 K01728 - csv:101218188 828.935