Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1424 ATGGAGAAAGATGAGAACTACTCGCAGGACCAAACAATGCCTCCAAGTTTATCTAATTTCCATCAAGATTACAATCTGCTGCAATCCTCTCACCCTCACCTTCATCAAGACCAATTCATGAAGTCTCGCTCCGTCGAAACTTCCAGCGAAAATAGCAACGGAATTCTCAGCAATTACTTCCTCAACAATAACCCTCATCAGCAGCAATATCTTCTTCCTCATCAGCAGATAACTTCTCTCGATAAACTCGGCTTCGGCGACGTAATGCAGTTTTCCGATTTCGGGCCCAAGCTCAGCTTAAATGGCCAAAACAACAAGTTTCTGGCTTCGGATCAAGACGGTGACTCCGGTGGAATCGACCCGGTTTACTTTCTCAAGTTTCCGGTACTGAACGATCGATCCGGTCATCAGGAACAGACGGTGGCGGGGCTGGTGGAAGGAGATATTAATGAGATGGATATGTCGGTGGAGAAAGGACCCCCCTTCGGGGAGGACGGCGAAGGGCGGGTTTCGGAGCATTCATCACGTAGGTTTCTTGGAGATGAAGATGATGATATGAAGAATGAAAAGAATAATAATTATGAGAATGAGAATGGTGGGAATTTAATGGAAGGGAAGAACAAGAGGAAAAGAGCGAGGTCGGTGAAGACGAACGAGGAAGTGGAAAGCCAGAGAATGACTCATATTGCAGTGGAGAGGAATAGAAGGAAGCAAATGAATGAGCATCTTCGTGTTTTGCGGTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGTGGAGCAATAGAATTCGTGAGGGAACTAGAGCAACTTCTACAGTGTTTGGAATCACAAAAACGACGAAGACTGTTAGGAGAAACGGCACCGACGATACAAGGACCTCCGCCAGATCCATCGTCGCAGCCGTATCTGCCACCGGGGGCGGTGTTTCCAAATCAAAACGACAACCAAATGAAAGAAATGGAGTTGGAAACGACGGCGGCGCTGATTCGTGAAGAAACAGCAGAAAGCAAATCGTGTTTGGCGGATGTGGAAGTGAAAGTGATAGGGTTTGATGCAATGATAAAGATTTTGTCGAGGAGAAGACCTGGGCAACTTATCAAAGCCATTGCTGCTCTGGAAGATCTCCAACTCAATATCCTTCATACCAATATCACTACCATTGAACAGACTGTTCTTTATTCCTTCAATGTCAAGGTGGCAAGTGAGTCAAGATTCACAGCAGAAGATATAGCGAGCTCGGTTCAACAGATATTTGGTTTTATTCACGCCAACACCGGCATGTGA 1305 45.98 MEKDENYSQDQTMPPSLSNFHQDYNLLQSSHPHLHQDQFMKSRSVETSSENSNGILSNYFLNNNPHQQQYLLPHQQITSLDKLGFGDVMQFSDFGPKLSLNGQNNKFLASDQDGDSGGIDPVYFLKFPVLNDRSGHQEQTVAGLVEGDINEMDMSVEKGPPFGEDGEGRVSEHSSRRFLGDEDDDMKNEKNNNYENENGGNLMEGKNKRKRARSVKTNEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGETAPTIQGPPPDPSSQPYLPPGAVFPNQNDNQMKEMELETTAALIREETAESKSCLADVEVKVIGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKVASESRFTAEDIASSVQQIFGFIHANTGM 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 46983964 46986835 + evm.model.ptg000013l.1424 HCH7g1424 548709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1424 434 MobiDBLite consensus disorder prediction 297 311 - -
HCH7g1424 434 MobiDBLite consensus disorder prediction 1 21 - -
HCH7g1424 434 MobiDBLite consensus disorder prediction 292 318 - -
HCH7g1424 434 CDD ACT_UUR-ACR-like 360 424 - -
HCH7g1424 434 MobiDBLite consensus disorder prediction 202 225 - -
HCH7g1424 434 SMART finulus 229 280 IPR011598 GO:0046983(InterPro)
HCH7g1424 434 CDD bHLH_AtFAMA_like 226 298 - -
HCH7g1424 434 Gene3D - 214 289 IPR036638 GO:0046983(InterPro)
HCH7g1424 434 ProSiteProfiles ACT domain profile. 360 434 IPR002912 -
HCH7g1424 434 Pfam Helix-loop-helix DNA-binding domain 224 275 IPR011598 GO:0046983(InterPro)
HCH7g1424 434 PANTHER TRANSCRIPTION FACTOR FAMA 105 426 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
HCH7g1424 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 298 IPR036638 GO:0046983(InterPro)
HCH7g1424 434 FunFam Basic helix-loop-helix transcription factor 214 289 - -
HCH7g1424 434 MobiDBLite consensus disorder prediction 158 192 - -
HCH7g1424 434 MobiDBLite consensus disorder prediction 154 225 - -
HCH7g1424 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 274 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1171 HCH-Chr7:44598974 HCH7g1424 HCH-Chr7:46983964 2.30E-41 dispersed
HCH7g1424 HCH-Chr7:46983964 HCH7g1803 HCH-Chr7:49575722 3.10E-41 dispersed
HCH7g1424 HCH-Chr7:46983964 HCH4g0243 HCH-Chr4:1468335 1.80E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33932 PF00010 HLH 9.50E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1424 K26213 - csv:101214530 436.417