Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g1424 | ATGGAGAAAGATGAGAACTACTCGCAGGACCAAACAATGCCTCCAAGTTTATCTAATTTCCATCAAGATTACAATCTGCTGCAATCCTCTCACCCTCACCTTCATCAAGACCAATTCATGAAGTCTCGCTCCGTCGAAACTTCCAGCGAAAATAGCAACGGAATTCTCAGCAATTACTTCCTCAACAATAACCCTCATCAGCAGCAATATCTTCTTCCTCATCAGCAGATAACTTCTCTCGATAAACTCGGCTTCGGCGACGTAATGCAGTTTTCCGATTTCGGGCCCAAGCTCAGCTTAAATGGCCAAAACAACAAGTTTCTGGCTTCGGATCAAGACGGTGACTCCGGTGGAATCGACCCGGTTTACTTTCTCAAGTTTCCGGTACTGAACGATCGATCCGGTCATCAGGAACAGACGGTGGCGGGGCTGGTGGAAGGAGATATTAATGAGATGGATATGTCGGTGGAGAAAGGACCCCCCTTCGGGGAGGACGGCGAAGGGCGGGTTTCGGAGCATTCATCACGTAGGTTTCTTGGAGATGAAGATGATGATATGAAGAATGAAAAGAATAATAATTATGAGAATGAGAATGGTGGGAATTTAATGGAAGGGAAGAACAAGAGGAAAAGAGCGAGGTCGGTGAAGACGAACGAGGAAGTGGAAAGCCAGAGAATGACTCATATTGCAGTGGAGAGGAATAGAAGGAAGCAAATGAATGAGCATCTTCGTGTTTTGCGGTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGTGGAGCAATAGAATTCGTGAGGGAACTAGAGCAACTTCTACAGTGTTTGGAATCACAAAAACGACGAAGACTGTTAGGAGAAACGGCACCGACGATACAAGGACCTCCGCCAGATCCATCGTCGCAGCCGTATCTGCCACCGGGGGCGGTGTTTCCAAATCAAAACGACAACCAAATGAAAGAAATGGAGTTGGAAACGACGGCGGCGCTGATTCGTGAAGAAACAGCAGAAAGCAAATCGTGTTTGGCGGATGTGGAAGTGAAAGTGATAGGGTTTGATGCAATGATAAAGATTTTGTCGAGGAGAAGACCTGGGCAACTTATCAAAGCCATTGCTGCTCTGGAAGATCTCCAACTCAATATCCTTCATACCAATATCACTACCATTGAACAGACTGTTCTTTATTCCTTCAATGTCAAGGTGGCAAGTGAGTCAAGATTCACAGCAGAAGATATAGCGAGCTCGGTTCAACAGATATTTGGTTTTATTCACGCCAACACCGGCATGTGA | 1305 | 45.98 | MEKDENYSQDQTMPPSLSNFHQDYNLLQSSHPHLHQDQFMKSRSVETSSENSNGILSNYFLNNNPHQQQYLLPHQQITSLDKLGFGDVMQFSDFGPKLSLNGQNNKFLASDQDGDSGGIDPVYFLKFPVLNDRSGHQEQTVAGLVEGDINEMDMSVEKGPPFGEDGEGRVSEHSSRRFLGDEDDDMKNEKNNNYENENGGNLMEGKNKRKRARSVKTNEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGETAPTIQGPPPDPSSQPYLPPGAVFPNQNDNQMKEMELETTAALIREETAESKSCLADVEVKVIGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKVASESRFTAEDIASSVQQIFGFIHANTGM | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 46983964 | 46986835 | + | evm.model.ptg000013l.1424 | HCH7g1424 | 548709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 297 | 311 | - | - | |
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 292 | 318 | - | - | |
HCH7g1424 | 434 | CDD | ACT_UUR-ACR-like | 360 | 424 | - | - | |
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 202 | 225 | - | - | |
HCH7g1424 | 434 | SMART | finulus | 229 | 280 | IPR011598 | GO:0046983(InterPro) | |
HCH7g1424 | 434 | CDD | bHLH_AtFAMA_like | 226 | 298 | - | - | |
HCH7g1424 | 434 | Gene3D | - | 214 | 289 | IPR036638 | GO:0046983(InterPro) | |
HCH7g1424 | 434 | ProSiteProfiles | ACT domain profile. | 360 | 434 | IPR002912 | - | |
HCH7g1424 | 434 | Pfam | Helix-loop-helix DNA-binding domain | 224 | 275 | IPR011598 | GO:0046983(InterPro) | |
HCH7g1424 | 434 | PANTHER | TRANSCRIPTION FACTOR FAMA | 105 | 426 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
HCH7g1424 | 434 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 223 | 298 | IPR036638 | GO:0046983(InterPro) | |
HCH7g1424 | 434 | FunFam | Basic helix-loop-helix transcription factor | 214 | 289 | - | - | |
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 158 | 192 | - | - | |
HCH7g1424 | 434 | MobiDBLite | consensus disorder prediction | 154 | 225 | - | - | |
HCH7g1424 | 434 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 223 | 274 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH7g1171 | HCH-Chr7:44598974 | HCH7g1424 | HCH-Chr7:46983964 | 2.30E-41 | dispersed | |
HCH7g1424 | HCH-Chr7:46983964 | HCH7g1803 | HCH-Chr7:49575722 | 3.10E-41 | dispersed | |
HCH7g1424 | HCH-Chr7:46983964 | HCH4g0243 | HCH-Chr4:1468335 | 1.80E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33932 | PF00010 | HLH | 9.50E-10 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH7g1424 | K26213 | - | csv:101214530 | 436.417 |