Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1427 ATGCTTTCTGGGTTTTCTCCGGAAACGGCTGCCGGAATGTACTCGGCGATTCCTTCACTTTCGATTGACGGTAGCAAGTTTCAGGGCTCTCTGGACGGAACAAACCTTCCCGGTGATGCTTGTTTGGTTCTGACGTCGGATCCGAAGCCCCGGCTCCGGTGGACGGCGGAGCTCCATGAGAGATTTGTTGATGCTGTTACTCAGCTTGGTGGTCCTGATAAGGCAACACCAAAGACGATTATGAGAACAATGGGAGTTAAAGGTCTCACCCTTTATCACTTAAAATCGCATCTCCAGAAATATCGGCTGGGAAAGCAATCATTCAAGGAATCAACTGAGAACTCGAAGGATGAAAGTCAAGAAACAAGTTCGTCTACGTCACCGTCGTCGAGAATAATGACACAGGATCTGACTGATGGTTTCCAAGTCACTGAGGCTCTGCGAGTGCAAATGGAGGTACAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGCCATCTCCAACTCCGCATTGAAGCACAGGGCAAATACCTGCAGTCTATACTTGAGAGGGCTTGTCAAGCTTTGAGCGATCAGGCTGCAGCATCTGCTGGACTTGAAGCTGCCAGAGAAGAGCTCTCTGAATTGGCAATTAAGGTCTCCAATGATTCTCAAGAGATGGCACCACCGGAGACCCCGAAAATGCTTCCCTTTTCAGAACTTGCTGCTGCGCTAGAAAACAGAAAAGCTCCCAACATTATGGCAAGGATAGGTGATTGCTCCATGGACAGCTGCCTTACATCAGCTGGAAGTCCAGTTTCTCCGATCGGAGTAGGCTCGAAGGCCACCGCATTGAAGAGACCAAGACCCGTGTTTAGTCATGGAGGCTCGATGACTATGGAGGGGAACGCTCGGCATGAAGTTGAATGGATGATGAGTAATATCGGATGA 930 49.89 MLSGFSPETAAGMYSAIPSLSIDGSKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDESQETSSSTSPSSRIMTQDLTDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSQEMAPPETPKMLPFSELAAALENRKAPNIMARIGDCSMDSCLTSAGSPVSPIGVGSKATALKRPRPVFSHGGSMTMEGNARHEVEWMMSNIG 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47007003 47010824 + evm.model.ptg000013l.1427 HCH7g1427 548712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1427 309 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
HCH7g1427 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677(InterPro)
HCH7g1427 309 Gene3D - 48 107 - -
HCH7g1427 309 SUPERFAMILY Homeodomain-like 49 106 IPR009057 -
HCH7g1427 309 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
HCH7g1427 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
HCH7g1427 309 MobiDBLite consensus disorder prediction 118 135 - -
HCH7g1427 309 FunFam Myb family transcription factor 48 106 - -
HCH7g1427 309 MobiDBLite consensus disorder prediction 107 135 - -
HCH7g1427 309 Coils Coil 199 219 - -
HCH7g1427 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 267 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0731 HCH-Chr14:35637900 HCH7g1427 HCH-Chr7:47007003 2.50E-40 dispersed
HCH7g0014 HCH-Chr7:143284 HCH7g1427 HCH-Chr7:47007003 6.40E-38 dispersed
HCH7g1427 HCH-Chr7:47007003 HCH9g1420 HCH-Chr9:46720663 1.20E-34 dispersed
HCH7g1427 HCH-Chr7:47007003 HCH2g0956 HCH-Chr2:52937380 2.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33933 PF00249 Myb_DNA-binding 1.80E-07 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1427 - - - 0.0