Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1427 ATGCTTTCTGGGTTTTCTCCGGAAACGGCTGCCGGAATGTACTCGGCGATTCCTTCACTTTCGATTGACGGTAGCAAGTTTCAGGGCTCTCTGGACGGAACAAACCTTCCCGGTGATGCTTGTTTGGTTCTGACGTCGGATCCGAAGCCCCGGCTCCGGTGGACGGCGGAGCTCCATGAGAGATTTGTTGATGCTGTTACTCAGCTTGGTGGTCCTGATAAGGCAACACCAAAGACGATTATGAGAACAATGGGAGTTAAAGGTCTCACCCTTTATCACTTAAAATCGCATCTCCAGAAATATCGGCTGGGAAAGCAATCATTCAAGGAATCAACTGAGAACTCGAAGGATGAAAGTCAAGAAACAAGTTCGTCTACGTCACCGTCGTCGAGAATAATGACACAGGATCTGACTGATGGTTTCCAAGTCACTGAGGCTCTGCGAGTGCAAATGGAGGTACAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGCCATCTCCAACTCCGCATTGAAGCACAGGGCAAATACCTGCAGTCTATACTTGAGAGGGCTTGTCAAGCTTTGAGCGATCAGGCTGCAGCATCTGCTGGACTTGAAGCTGCCAGAGAAGAGCTCTCTGAATTGGCAATTAAGGTCTCCAATGATTCTCAAGAGATGGCACCACCGGAGACCCCGAAAATGCTTCCCTTTTCAGAACTTGCTGCTGCGCTAGAAAACAGAAAAGCTCCCAACATTATGGCAAGGATAGGTGATTGCTCCATGGACAGCTGCCTTACATCAGCTGGAAGTCCAGTTTCTCCGATCGGAGTAGGCTCGAAGGCCACCGCATTGAAGAGACCAAGACCCGTGTTTAGTCATGGAGGCTCGATGACTATGGAGGGGAACGCTCGGCATGAAGTTGAATGGATGATGAGTAATATCGGATGA 930 49.89 MLSGFSPETAAGMYSAIPSLSIDGSKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDESQETSSSTSPSSRIMTQDLTDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSQEMAPPETPKMLPFSELAAALENRKAPNIMARIGDCSMDSCLTSAGSPVSPIGVGSKATALKRPRPVFSHGGSMTMEGNARHEVEWMMSNIG 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47007003 47010824 + evm.model.ptg000013l.1427 HCH7g1427 548712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1427 309 Pfam MYB-CC type transfactor, LHEQLE motif 142 187 IPR025756 -
HCH7g1427 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677(InterPro)
HCH7g1427 309 Gene3D - 48 107 - -
HCH7g1427 309 SUPERFAMILY Homeodomain-like 49 106 IPR009057 -
HCH7g1427 309 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
HCH7g1427 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
HCH7g1427 309 MobiDBLite consensus disorder prediction 118 135 - -
HCH7g1427 309 FunFam Myb family transcription factor 48 106 - -
HCH7g1427 309 MobiDBLite consensus disorder prediction 107 135 - -
HCH7g1427 309 Coils Coil 199 219 - -
HCH7g1427 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 267 IPR046955 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0731 HCH-Chr14:35637900 HCH7g1427 HCH-Chr7:47007003 2.50E-40 dispersed
HCH7g0014 HCH-Chr7:143284 HCH7g1427 HCH-Chr7:47007003 6.40E-38 dispersed
HCH7g1427 HCH-Chr7:47007003 HCH9g1420 HCH-Chr9:46720663 1.20E-34 dispersed
HCH7g1427 HCH-Chr7:47007003 HCH2g0956 HCH-Chr2:52937380 2.10E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33933 PF00249 Myb_DNA-binding 1.80E-07 CL0123 HCH TF