Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1431 ATGTATCAGAGCTGTCGTCGCCTATTCAGAATGGGTAAAGAAAAGATTCACATTAACATCGTGGTCATTGGTCATGTCGACTCTGGAAAATCGACCACAACTGGCCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTATGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATTACCATTGACATTGCCTTGTGGAAGTTTGAGACCACAAAGTACTACTGCACAGTCATTGATGCTCCCGGGCATCGTGATTTTATTAAGAACATGATCACAGGAACATCACAGGCAGATTGTGCTATCCTCATTATTGATTCCACTACGGGTGGTTTTGAAGCCGGCATTTCCAAGGATGGACAGACCCGTGAACATGCCCTCCTTGCCTTCACCCTTGGTGTCAAGCAAATGATTTGCTGCTGCAACAAGATGGATGCCACTACTCCCAAATACTCCAAGTCGAGGTTTGATGAAATTGTTAAGGAAGTTTCTTCCTACCTGAAAAAGGTAGGATACAACCCTGATAAAATCCCTTTTGTTCCTATCTCTGGGTTTGAGGGTGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGCCCAACTCTCCTTGAGGCCCTTGACTTGATCCTTGAACCTAAGAGACCCTCAGACAAACCCCTCCGATTACCACTCCAGGATGTCTACAAAATTGGTGGTATTGGTACCGTTCCGGTAGGTCGTGTTGAGACTGGTGTGCTTAAACCTGGTATGGTAGTAACCTTTGCACCTACTGGACTCACCACTGAAGTTAAGTCAGTTGAGATGCACCATGAATCTCTTCCAGAGGCCCTCCCTGGTGACAATGTTGGTTTCAATGTCAAGAATGTTGCTGTGAAGGATCTTAAACGTGGTTACGTTGCATCCAACTCAAAGGATGATCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAGGTCATTATTATGAATCACCCTGGCCAGATTGGAAACGGATATGCCCCTGTCCTTGATTGCCACACTTCCCATATTGCCGTTAAATTCTCAGAGATTTTGACCAAGATTGACCGACGATCTGGTAAGGAACTCGAGAAGGAGCCTAAGTTTTTGAAGAATGGTGATGCTGGGATGGTCAAGATGGTTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCCGAGTATCCTCCAATGGGTCGATTTGCCGTCAGGGACATGCGCCAAACAGTTGCTGTGGGTGTTATCAAGAGCGTTGAGAAGAAAGATCCTAGTGGAGCTAAAGTCACTAAATCTGCAGCCAAGAAAAAGTGA 1374 46.14 MYQSCRRLFRMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLILEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPMGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47027301 47029826 - evm.model.ptg000013l.1431 HCH7g1431 548716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1431 457 Gene3D Translation factors 239 326 - -
HCH7g1431 457 SUPERFAMILY Translation proteins 241 331 IPR009000 -
HCH7g1431 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 259 IPR027417 -
HCH7g1431 457 Hamap Elongation factor Tu [tuf]. 12 442 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
HCH7g1431 457 Gene3D - 6 237 IPR027417 -
HCH7g1431 457 Gene3D Translation factors 333 440 - -
HCH7g1431 457 Pfam Elongation factor Tu domain 2 258 323 IPR004161 GO:0005525(InterPro)
HCH7g1431 457 CDD EF1_alpha_II 240 330 - -
HCH7g1431 457 FunFam Elongation factor 1-alpha 239 326 - -
HCH7g1431 457 FunFam Elongation factor 1-alpha 333 440 - -
HCH7g1431 457 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 71 86 IPR031157 -
HCH7g1431 457 Pfam GTP-eEF1A C-terminal domain-like 337 437 IPR054696 -
HCH7g1431 457 Pfam Elongation factor Tu GTP binding domain 16 234 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 336 439 IPR009001 -
HCH7g1431 457 CDD EF1_alpha 19 237 - -
HCH7g1431 457 CDD EF1_alpha_III 333 436 - -
HCH7g1431 457 PRINTS GTP-binding elongation factor signature 158 167 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 PRINTS GTP-binding elongation factor signature 98 108 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 PRINTS GTP-binding elongation factor signature 19 32 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 PRINTS GTP-binding elongation factor signature 114 125 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 PRINTS GTP-binding elongation factor signature 78 86 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 FunFam Elongation factor 1-alpha 11 236 - -
HCH7g1431 457 NCBIfam translation elongation factor EF-1 subunit alpha 11 443 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
HCH7g1431 457 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 15 240 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH7g1431 457 PANTHER TRANSLATION FACTOR 14 437 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0598 HCH-Chr13:4581108 HCH7g1431 HCH-Chr7:47027301 5.10E-55 dispersed
HCH3g0198 HCH-Chr3:1253954 HCH7g1431 HCH-Chr7:47027301 9.90E-74 dispersed
HCH13g0416 HCH-Chr13:2860275 HCH7g1431 HCH-Chr7:47027301 3.70E-255 transposed
HCH6g1411 HCH-Chr6:47944001 HCH7g1431 HCH-Chr7:47027301 2.00E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1431 K03231 - vvi:100246711 875.93