Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1504 ATGGCTGGCTTGGACTTAGGCTCAGCTTCCCACTTTCTTCAGCAACTCCAACACCGTCCCATCGATCTTCACCTTCAACGACCCTCCGACGCCGACGCCGACGATGATGACGGCGTCGACGACATCTCCCACCAACCCAACAACTTCGGCGGCGATAATATCATCACTCGCCGGCCGAGAGGCCGTCCTGCCGGTTCCAAGAACAAGCCAAAGCCGCCGGTGATCATCACCAGAGAAAGCGCCAATACCTTACGTGCTCATATTCTCGAAATCAACTCCGGTCACGACGTCTTCGAATCCGTCGCTACTTACGCCCGTAAACGTCAACGGGGGATCTGTGTCTTGAACGGCACCGGCGCCGTCACCAACGTCACTTTACGTCAACCGGCATCGGCCGGGACTGTCGTCACTCTTCACGGTAGGTTTGAGATTCTCTCCTTGACCGGTTCCTTCTTACCGCCGCCTGCTCCTCCTGGCGCCACCAGTTTGACTGTGTTCCTAGCCGGCGGTCAAGGTCAGGTTGTCGGAGGGAATGTCGTCGGTGCTCTTATAGCTTCGGGGCCGGTTATCATCATCGCTTCTTCATTCACTAACGTCGCATACGAGAGATTGCCGTTGGACGAGGAGGAGCCTCCTCAGCAACAGCCGCCGTCTACCGACGGAGGCGGTGGCGGTGGAGGAAGCCTCAACAATCCGTTTACGACCGATATGTCGGCCGGATTGCCGTTCTTCAATATTCCGAATCAGAATCAGATGCCGTTGGATGGATGGGGTGGTGGAAACTCAGGAGGAAGGGCTTCTTATTAA 807 56.38 MAGLDLGSASHFLQQLQHRPIDLHLQRPSDADADDDDGVDDISHQPNNFGGDNIITRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEINSGHDVFESVATYARKRQRGICVLNGTGAVTNVTLRQPASAGTVVTLHGRFEILSLTGSFLPPPAPPGATSLTVFLAGGQGQVVGGNVVGALIASGPVIIIASSFTNVAYERLPLDEEEPPQQQPPSTDGGGGGGGSLNNPFTTDMSAGLPFFNIPNQNQMPLDGWGGGNSGGRASY 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47619708 47620514 - evm.model.ptg000013l.1504 HCH7g1504 548789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1504 268 CDD DUF296 85 168 IPR005175 -
HCH7g1504 268 Gene3D - 84 213 - -
HCH7g1504 268 MobiDBLite consensus disorder prediction 207 268 - -
HCH7g1504 268 FunFam AT-hook motif nuclear-localized protein 84 211 - -
HCH7g1504 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 251 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH7g1504 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 215 - -
HCH7g1504 268 ProSiteProfiles PPC domain profile profile. 81 217 IPR005175 -
HCH7g1504 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 197 IPR005175 -
HCH7g1504 268 MobiDBLite consensus disorder prediction 213 256 - -
HCH7g1504 268 MobiDBLite consensus disorder prediction 26 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1504 HCH-Chr7:47619708 HCH7g1551 HCH-Chr7:47972397 1.60E-64 dispersed
HCH5g0280 HCH-Chr5:1673266 HCH7g1504 HCH-Chr7:47619708 2.60E-73 wgd
HCH6g1107 HCH-Chr6:45680408 HCH7g1504 HCH-Chr7:47619708 2.20E-69 wgd
HCH6g1352 HCH-Chr6:47549431 HCH7g1504 HCH-Chr7:47619708 2.10E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1504 - - - 0.0