Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1518 ATGCTTGCTTCAAATCTCTCAACCGTAATTTCTTCAAAAACCCCACTTCCCTACCCCACAAATTCAATTCCGAATCTTCGCTTACGCCCCCAATTCTCAAACTCCATCAAAACTAATGACGTCTTTTCAAAACACGAGTTCAAGATTTCCTCTTCAAATCCCAAAACCACCTTTTTTTACAATTCCCTCACTAACCCATTTGGGTTTTCATCAAAATCCCAACTCCAAATTCCCAGAGCAGCATCTGAAGGCAATCATGAAGGAGAAATAGAAAAAGAAGAAGAAATTGTTGCTTCCAAATCCAATAGCAAAACCCTACAGCTTGCTGTTGTTTTTGGATTGTGGTATTTCCAAAACATAGTTTTCAATATTTATAATAAGAAAGTTTTGAATGTTTTCAATTTCCCTTGGCTTCTTGCTTCCTTTCAGTTGTTTGCTGGATCAGTTTGGATGTTAATTCTATGGTCATTAAAGCTTCAACCTTGCCCTAAAATTTCAAAGCCATTTATTATTGCATTGCTTGGCCCTGCTTTATTTCACACAATTGGGCATATTTCTGCTTGTGTTTCATTCTCTAAAGTGGCTGTTTCTTTCACTCATGTCATCAAATCATCCGAGCCCGTTTTCTCCGTCGTGTTTTCGTCGTTTCTCGGCGATACTTACCCCATTCAGGTCTGGCTTTCAATTCTTCCTATTGTTTTTGGATGCTCTCTTGCTGCTGTTACTGAAGTTTCATTCAATTTCCAAGGCTTGTGGGGTGCTATGATTAGTAATGTTGGGTTTGTTTTGAGGAATATTTATTCAAAAAAGAGCTTGCAGAATTTTAAGGAAGTTGATGGGTTGAATTTATATGGTTGGATTAGTATAATTTCATTGCTCTATCTGTTTCCCGTGGCGATTTTCGTCGAAGGGTCTCAATGGGTTCAAGGGTATCACCAAGCTATTGCATCAGTGGGGAAGGCATCAACATTGTATCTTTGGGTTATGATTTCTGGGATATTTTACCATCTTTATAATCAGTCTTCTTATCAAGCATTGGATGAGATTAGCCCTTTGACGTTTTCGGTTGGAAATACAATGAAGAGAGTGGTCGTGATTGTGTCGACCGTGTTGGTTTTCCGAAACCCGATCAGACCTCTGAATGCCATCGGTTCTGCCTTGGCAATATTCGGTACTTTCCTGTATACTCAGGCAACTTCTTCTAAGAGTAAGAGTGCTAAGAAAATTGAGGGTGAGAAGAAGGAATGA 1248 39.02 MLASNLSTVISSKTPLPYPTNSIPNLRLRPQFSNSIKTNDVFSKHEFKISSSNPKTTFFYNSLTNPFGFSSKSQLQIPRAASEGNHEGEIEKEEEIVASKSNSKTLQLAVVFGLWYFQNIVFNIYNKKVLNVFNFPWLLASFQLFAGSVWMLILWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSSEPVFSVVFSSFLGDTYPIQVWLSILPIVFGCSLAAVTEVSFNFQGLWGAMISNVGFVLRNIYSKKSLQNFKEVDGLNLYGWISIISLLYLFPVAIFVEGSQWVQGYHQAIASVGKASTLYLWVMISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSTVLVFRNPIRPLNAIGSALAIFGTFLYTQATSSKSKSAKKIEGEKKE 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47715233 47716480 + evm.model.ptg000013l.1518 HCH7g1518 548803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1518 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 286 397 - -
HCH7g1518 415 Pfam Triose-phosphate Transporter family 106 395 IPR004853 -
HCH7g1518 415 PANTHER SOLUTE CARRIER FAMILY 35 103 398 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
HCH7g1518 415 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 106 405 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1168 HCH-Chr12:9962149 HCH7g1518 HCH-Chr7:47715233 1.90E-85 dispersed
HCH13g0833 HCH-Chr13:8411107 HCH7g1518 HCH-Chr7:47715233 4.90E-65 dispersed
HCH14g0830 HCH-Chr14:36209074 HCH7g1518 HCH-Chr7:47715233 6.70E-83 dispersed
HCH3g0343 HCH-Chr3:2193587 HCH7g1518 HCH-Chr7:47715233 3.90E-57 dispersed
HCH7g1518 HCH-Chr7:47715233 HCH6g0777 HCH-Chr6:42561872 5.20E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1518 K15283 - mdm:103410080 570.466