Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1526 ATGTCACTCAAAATTCCACAAACCCTTCTAATAATTCTCTCTCTCATAACCATTCTCTTTCCTATTCCCATCTTCTCTTATTCCCACAAAGACATCGTTAACTATTGTAGCCAAACACCCTTCCCCGCCCCATGCGAGGAGTTCCTCCGCCATCATAAATCCGACAACATTCCGATCAACGGAAAATCCCATTTCCTCAAAATCTTAACGCAGACCGCCATTGAAAGAGCCATTCTTGCTCATAAAAACGCCATTTCCCTTGGCCCTAAATGCCGAAACCCTAAAGAAAAAGCTGCATGGGCTGATTGTCTCACGCTTTACGATTACGTAATCTCTAAACTTAATAAAACCTCCACCCGTTGCAGCCAAGAAGACGCTCAGACATGGCTCAGCGCCGCCCTAACAAGCATCGATACGTGTCGGACCGGGTTTTACGAGCTCGGTGTTTCCGATTACGTCTTGACGCTGATGTCGAATAACGTGTCGAAGTTGATAAGTGATGGTTTGTCGGTGAACAAGCCGCCGGTGGATGGGTTTACTGCGCCGAGTCAGCAGGAAGGGTTTCCGAGTTGGGTAAATCCCGGTGAACGGAAACTGTTGCAGGCAAATTCTCCGGCTGCGAAGGCGAATGTCGTGGTGGCGAAAGATGGGTCGGGGAAGTTTAAGACGGTGAAAGAGGCGGTGAATAGTGCTAAGGGAGGAGGGAGATTTGTGATTTACGTGAAGGCCGGAGTTTACAGTGAGAATGTTGAGATAAAGGCGAAGAATATTATGTTGATCGGCGACGGAATTGGGAAGACGATTATCACCGGAAGTAGGAGTGTTGGCGGTGGTTCCACCACTTTTAATTCAGCTACCGTTGCGATTACCGGCGATGGATTCATCGCCCGCGATATAACCTTCAGAAACACCGCCGGACCAACAAACCACCAGGCCGTGGCGCTCCGATCAGGCTCCGATCTATCCGTATTTTACCGATGCGGATTCGAAGGTTATCAAGACACTCTCTACGTCTATTCCGATCGACAATTCTACAGAGAATGTGACATTTACGGAACCGTTGATTTCATATTCGGTAACGCCGCCGCCGTTCTCCAAAACTGCAATATTTTTGCCCGTACTCCACCTCAAAGAACCATCACCATCACCGCACAAGGCCGTTCCGATCCAAATCAAAACACAGGAATCTCAATCCATAACTGTAAAGTTACTTCCGCCGGTAATATGAACGGCGTCAAGGCATATCTCGGCCGGCCATGGAGGCAATACTCGCGCACTGTTTTCATGAAATCATCTCTCGATGGTTTTATTAATCCGGCGGGATGGATGGAATGGAGCGGCAATTTTGCCCTAAACACGTTGTATTACGGCGAGTATTTGAATACCGGCGCCGGATCATCGACGGCTAATCGGGTTAAATGGAAAGGGTACCGCGTGATTACTAGCGCGTCGGAAGCTTCAAAATTCACCGTCGGAAGTTTCATCGTCGGTGGCTCATGGTTGCCGGCGACCGGTGTTCCTTTCACGTCCGGCCTTTGA 1539 48.93 MSLKIPQTLLIILSLITILFPIPIFSYSHKDIVNYCSQTPFPAPCEEFLRHHKSDNIPINGKSHFLKILTQTAIERAILAHKNAISLGPKCRNPKEKAAWADCLTLYDYVISKLNKTSTRCSQEDAQTWLSAALTSIDTCRTGFYELGVSDYVLTLMSNNVSKLISDGLSVNKPPVDGFTAPSQQEGFPSWVNPGERKLLQANSPAAKANVVVAKDGSGKFKTVKEAVNSAKGGGRFVIYVKAGVYSENVEIKAKNIMLIGDGIGKTIITGSRSVGGGSTTFNSATVAITGDGFIARDITFRNTAGPTNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAAVLQNCNIFARTPPQRTITITAQGRSDPNQNTGISIHNCKVTSAGNMNGVKAYLGRPWRQYSRTVFMKSSLDGFINPAGWMEWSGNFALNTLYYGEYLNTGAGSSTANRVKWKGYRVITSASEASKFTVGSFIVGGSWLPATGVPFTSGL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47791557 47796342 - evm.model.ptg000013l.1526 HCH7g1526 548811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1526 512 PANTHER PECTINESTERASE 14 503 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH7g1526 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 172 IPR035513 -
HCH7g1526 512 CDD PMEI-like_3 36 173 - -
HCH7g1526 512 Pfam Pectinesterase 210 497 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH7g1526 512 Gene3D - 205 512 IPR012334 -
HCH7g1526 512 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
HCH7g1526 512 FunFam Pectinesterase 204 512 - -
HCH7g1526 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 173 IPR035513 -
HCH7g1526 512 SUPERFAMILY Pectin lyase-like 205 511 IPR011050 -
HCH7g1526 512 SMART PMEI_2 27 171 IPR006501 GO:0004857(InterPro)
HCH7g1526 512 Pfam Plant invertase/pectin methylesterase inhibitor 32 170 IPR006501 GO:0004857(InterPro)
HCH7g1526 512 NCBIfam pectinesterase inhibitor domain 9 172 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0771 HCH-Chr10:7476523 HCH7g1526 HCH-Chr7:47791557 9.20E-84 dispersed
HCH5g0736 HCH-Chr5:5353497 HCH7g1526 HCH-Chr7:47791557 1.20E-175 dispersed
HCH7g1526 HCH-Chr7:47791557 HCH8g0081 HCH-Chr8:3954616 5.20E-112 dispersed
HCH7g1526 HCH-Chr7:47791557 HCH7g1528 HCH-Chr7:47810322 1.70E-110 proximal
HCH11g1124 HCH-Chr11:42991513 HCH7g1526 HCH-Chr7:47791557 2.00E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1526 K01051 - csv:101217552 771.926