Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1528 ATGCCCACCATCTTTCTCCTCTTCTTACTATTAACCATGGTTTCCTCCACCATTTCCTCATTCCACCGGATGAACCCGGTTCATTTGGACCGGACTAGAGTCATGGAAGCTAGAAATTCGGTTCGCTACTCTATGGCTCGAGTAAGCCGAAAACGAAGCCGTTTTGATTATCGGAATGTGCAGGCCGCCGCGTTGGACGATTGCGCAGTGCTGTATGAGAACACAGAATCGCGGCTCGACCGGTTGCTGTATGGACCGGATTATACGGCTGACGATGCTCTGACGTGGCTTAGTGGAGCCATGGCTAACCACCGGAGTTGTTTGGATGGCCTGGAAGAGAAGGGTGTCACGGCGGCGGCGGCGGCGGAGGAGAAGAATCTAACCATCTTGCTTCGCGAAGCTTTAGGTTTATATGAGAATATTGCCACCGGGAATGAGTGGAATGGATCAGAACGAGGTGAGAAACAGAAATATACAGAAAATGGGGGAATCAATTTAGCGAAATGGAATCCGGCGACGTCGAAAGCCGAGTATGTGGTGGCGGTGGATGGTTCCGGCACGCACAAAACCATAAACGGAGCTGTGGCGGCGCTGGAGAGGAGTGGCAGTAGGTGGCGGCGGTCGGAGAGAGTGGTGATATACGTGAAAGCGGGAGTTTATAAAGAGAATGTGGAAATTGGAAGGGGATTGAAGAATGTGATGATGGTCGGAGATGGCATTGACAAAACAATTGTCACCGGCAACCGGAATGTCCCTGACGGTGCAACCACTTATAATTCTGCTACCTTTGGCGTCTCCGGCGACGGATTTTGGGCTAGGGACATGACATTTGAGAACACGGCCGGGCCCCATAAGCACCAAGCGGTGGCGCTAAGGGTTAACTCCGACCTCTCCGTCTTCTTCCGTTGCAGCTTCAAAGGCTATCAAGACACTCTCTTCCTCCACTCCCTCCGCCAATTCTACCGTGATTGCCACATCTACGGAACCATAGATTTCATCTTCGGCGACGCCGCCGCCGTCCTTCAAAACTCCGATATCTTCGTCCGAAAGCCCATGAACCACCAAGGCAACATCATCACGGCCCAAGGCCGAGACCATCCGAGGCAAAACACCGGCTTTTCCATCCACCGATCACGTGTCCGGCCTGCGCCGGAGTTTTCAGCCGTCAAGGGCTCGTTCAAGACGTATCTTGGACGGCCGTGGAAGCGATACTCGAGGACTGTGTTCATGGCGACGGATTTGGATGGATTGATTGATCCATTGGGGTGGGAAAAATGGGAAGGGAGTTTTGCTCTTTCTACATTGTATTATGGAGAATATAAGAATTCCGGCAAGGGTTCTTCGACGATAAATCGGGTTAAATGGCCTGGTTTTCACGTTCTGAAGAGAGCTCAAGAGGTTAAGCCTTTCACGGTGTCCGGTTTTCTTCGCGGTCATGAATGGATTCCGGTGACTGGTGTGCCGTTTATTGCCGGAGCGTAA 1482 51.96 MPTIFLLFLLLTMVSSTISSFHRMNPVHLDRTRVMEARNSVRYSMARVSRKRSRFDYRNVQAAALDDCAVLYENTESRLDRLLYGPDYTADDALTWLSGAMANHRSCLDGLEEKGVTAAAAAEEKNLTILLREALGLYENIATGNEWNGSERGEKQKYTENGGINLAKWNPATSKAEYVVAVDGSGTHKTINGAVAALERSGSRWRRSERVVIYVKAGVYKENVEIGRGLKNVMMVGDGIDKTIVTGNRNVPDGATTYNSATFGVSGDGFWARDMTFENTAGPHKHQAVALRVNSDLSVFFRCSFKGYQDTLFLHSLRQFYRDCHIYGTIDFIFGDAAAVLQNSDIFVRKPMNHQGNIITAQGRDHPRQNTGFSIHRSRVRPAPEFSAVKGSFKTYLGRPWKRYSRTVFMATDLDGLIDPLGWEKWEGSFALSTLYYGEYKNSGKGSSTINRVKWPGFHVLKRAQEVKPFTVSGFLRGHEWIPVTGVPFIAGA 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47810322 47813268 + evm.model.ptg000013l.1528 HCH7g1528 548813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1528 493 SUPERFAMILY Pectin lyase-like 172 491 IPR011050 -
HCH7g1528 493 PANTHER PECTINESTERASE 34 483 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH7g1528 493 CDD PMEI-like_4 34 138 - -
HCH7g1528 493 FunFam Pectinesterase 171 493 - -
HCH7g1528 493 Gene3D Invertase/pectin methylesterase inhibitor family protein 11 141 IPR035513 -
HCH7g1528 493 ProSitePatterns Pectinesterase signature 2. 326 335 IPR033131 -
HCH7g1528 493 Pfam Pectinesterase 178 478 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH7g1528 493 SMART PMEI_2 9 137 IPR006501 GO:0004857(InterPro)
HCH7g1528 493 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 138 IPR035513 -
HCH7g1528 493 Pfam Plant invertase/pectin methylesterase inhibitor 27 130 IPR006501 GO:0004857(InterPro)
HCH7g1528 493 Gene3D - 171 493 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1528 HCH-Chr7:47810322 HCH8g0081 HCH-Chr8:3954616 1.60E-105 dispersed
HCH7g1526 HCH-Chr7:47791557 HCH7g1528 HCH-Chr7:47810322 1.70E-110 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1528 K01051 - csv:101217635 618.616