Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1547 | ATGGAAGAGAGAGAAGGAATGAGCTCAGGGGTAACTGTGATAGGAGCTGAGGCTCCATCAGCTTATCATGTGGCTCCAAGAACTGATAACCTGCCTCAGGCACCCGGTGGTTCGCCTACGGTGGCTGCCTCACCGGTGAGTGTCGGTCTGCCCGGAAGTGGAACTACAGGGAAGAAGAAGAGGGGCAGACCAAGAAAGTATGGACCAGATGGAACAGTCACAATGGCATTGTCTCCATTGCCACTTTCTTCTTCAGCTCCAGCGTCCGGGGGCGGCTTCTCCATCACGAAGCGGGGGAAGGCGCGGCGGGCTGGTTCCGAGTATAAGCATCACAAGAAAGTGGGAATGGAATATATAGGTGATTGGAATGCATGTTCCGTTGGCATGAATTTTATGCCCCATATCATAACGGTCAATGCTGGTGAGGATGTCACGATGAAGGTAATATCATTTTCCCAACAAGGTCCTCGAGCCATCTGCATTCTTTCTGCTAATGGAGTAATTTCAAACGTTACACTTCGTCAGCCCGATTCTTCTGGCGGTACTTTAACATATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCCTTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGTGTCTCCTTGTCTAGCCCCGACGGTCGTGTTGTCGGGGGAGGAGTAGCTGGTTTACTTATAGCAGCTGGCCCAGTACAGGTTGTGGTAGGAAGCTTTCTACCAACTAGCCAACAAGAGCAGAAAGTAAAGAAGCAAAAGCCCGAGACCGTACCAGCTACCGTTCCAATCTCGAGCACCACACCAGCCACCATACCGACTTCCATTGCCGATACTGAAGATGCTTTAACTTTAAATGGAAACGGCCTGCAACATCCCAGCTCCCTCAAACCGACATTCACTCCTTCGCCTTTCCAGAGGGACAATTGGGGTGGCGCCGTGCATTCGTTGCAGGAGCCGAGAAATGCAACTGACATCAACATATCGCTGCCCGGCTAG | 1017 | 51.03 | MEEREGMSSGVTVIGAEAPSAYHVAPRTDNLPQAPGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPASGGGFSITKRGKARRAGSEYKHHKKVGMEYIGDWNACSVGMNFMPHIITVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSQQEQKVKKQKPETVPATVPISSTTPATIPTSIADTEDALTLNGNGLQHPSSLKPTFTPSPFQRDNWGGAVHSLQEPRNATDINISLPG | 338 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 47928116 | 47931712 | - | evm.model.ptg000013l.1547 | HCH7g1547 | 548832 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1547 | 338 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 133 | 246 | IPR005175 | - | |
| HCH7g1547 | 338 | Gene3D | - | 133 | 264 | - | - | |
| HCH7g1547 | 338 | MobiDBLite | consensus disorder prediction | 20 | 98 | - | - | |
| HCH7g1547 | 338 | CDD | DUF296 | 133 | 246 | IPR005175 | - | |
| HCH7g1547 | 338 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 9 | 298 | IPR039605 | GO:0003680(InterPro) | |
| HCH7g1547 | 338 | MobiDBLite | consensus disorder prediction | 251 | 317 | - | - | |
| HCH7g1547 | 338 | FunFam | AT-hook motif nuclear-localized protein 1-like | 133 | 263 | - | - | |
| HCH7g1547 | 338 | ProSiteProfiles | PPC domain profile profile. | 127 | 271 | IPR005175 | - | |
| HCH7g1547 | 338 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 132 | 252 | - | - | |
| HCH7g1547 | 338 | MobiDBLite | consensus disorder prediction | 77 | 91 | - | - | |
| HCH7g1547 | 338 | MobiDBLite | consensus disorder prediction | 265 | 312 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g0424 | HCH-Chr5:2804270 | HCH7g1547 | HCH-Chr7:47928116 | 3.20E-94 | dispersed | |
| HCH5g0505 | HCH-Chr5:3435777 | HCH7g1547 | HCH-Chr7:47928116 | 1.00E-50 | dispersed | |
| HCH5g0750 | HCH-Chr5:5464660 | HCH7g1547 | HCH-Chr7:47928116 | 1.20E-40 | dispersed | |
| HCH6g0969 | HCH-Chr6:44513468 | HCH7g1547 | HCH-Chr7:47928116 | 1.50E-82 | dispersed | |
| HCH7g1547 | HCH-Chr7:47928116 | HCH9g0523 | HCH-Chr9:3379024 | 1.30E-53 | dispersed | |
| HCH7g1547 | HCH-Chr7:47928116 | HCH7g1551 | HCH-Chr7:47972397 | 4.10E-20 | proximal | |
| HCH4g0865 | HCH-Chr4:5539854 | HCH7g1547 | HCH-Chr7:47928116 | 5.90E-57 | transposed | |
| HCH11g1149 | HCH-Chr11:43720186 | HCH7g1547 | HCH-Chr7:47928116 | 2.10E-63 | wgd | |
| HCH13g1201 | HCH-Chr13:39302289 | HCH7g1547 | HCH-Chr7:47928116 | 1.10E-21 | wgd |
Pathway information