Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1551 ATGGATCGAGCCACCGCCCACGGCCGGCAACTTCCACCGCCGTTTCTTTCAGTTTCAAGAGATCTTCACCACCAATTCCTCCACCACCAACAAACACAAAATTCTGAAGAAGAACAAAGCGCGAATGGAAACTCCGGTACTAATTCCATCACCGCAATCGAAGGGAAAGACCTAAGCACCGGCACCGGCGATGGAGAGAGTTCAAGAAGACCTAGAGGCCGGCCAGCCGGTTCCAAGAACAAACCTAAACCTCCAATTATAATCACTCGAGACAGCGCAAACGCCCTCCGATCGCATATCATCGAAATAGCTAACGGTTCCGATATAATCGAGTCGATGAGCCTCTTCGCACGGCGGAGACAAAGAGGAATTTGCTTATTGAGTGGTACCGGAACTGTCACTAATGTTACTCTCAAACAGCCAGCTTCTCCCGGAGCTGTTATCACTTTACATGGAAGATTCGATATTCTATCGCTTTCCGGTTCCTTTCTGCCGCCACCGGCACCTCCTGCCGCCTCTGGATTGACCGTGTACTTGGCCGGAGGACAAGGTCAGGTGGTCGGGGGAAGTGTAGTAGGGTCACTTTTAACTTCAGGACCGGTGGTGATAATGGCAGCTTCCTTTGGAAATGCTGCTTATGAGAGGCTGCCGCTTGACGTCGAGGACGAGCCAACACCGGCACCGGATGGTGGAAATAGTCCCGTTGGATCGCCGGACATCGTCGGAAACCAGCAGCAACAATTCTTTCCGGATCCAAACTCGTCGCTTTTCCATGGAATGACGCCGCCACAGCAGCTCTTAAACTCGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGGCCACCATTTTAA 858 52.33 MDRATAHGRQLPPPFLSVSRDLHHQFLHHQQTQNSEEEQSANGNSGTNSITAIEGKDLSTGTGDGESSRRPRGRPAGSKNKPKPPIIITRDSANALRSHIIEIANGSDIIESMSLFARRRQRGICLLSGTGTVTNVTLKQPASPGAVITLHGRFDILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGSVVGSLLTSGPVVIMAASFGNAAYERLPLDVEDEPTPAPDGGNSPVGSPDIVGNQQQQFFPDPNSSLFHGMTPPQQLLNSCQLPTEPYWGTGRPPF 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 47972397 47973254 + evm.model.ptg000013l.1551 HCH7g1551 548836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1551 285 MobiDBLite consensus disorder prediction 32 66 - -
HCH7g1551 285 MobiDBLite consensus disorder prediction 28 88 - -
HCH7g1551 285 CDD DUF296 97 164 IPR005175 -
HCH7g1551 285 FunFam AT-hook motif nuclear-localized protein 96 223 - -
HCH7g1551 285 ProSiteProfiles PPC domain profile profile. 93 229 IPR005175 -
HCH7g1551 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 208 IPR005175 -
HCH7g1551 285 MobiDBLite consensus disorder prediction 237 275 - -
HCH7g1551 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 284 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
HCH7g1551 285 MobiDBLite consensus disorder prediction 220 285 - -
HCH7g1551 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 223 - -
HCH7g1551 285 Gene3D - 96 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0696 HCH-Chr12:4263390 HCH7g1551 HCH-Chr7:47972397 2.00E-43 dispersed
HCH13g1201 HCH-Chr13:39302289 HCH7g1551 HCH-Chr7:47972397 6.30E-97 dispersed
HCH5g0428 HCH-Chr5:2860572 HCH7g1551 HCH-Chr7:47972397 2.80E-84 dispersed
HCH6g1107 HCH-Chr6:45680408 HCH7g1551 HCH-Chr7:47972397 2.20E-61 dispersed
HCH6g1352 HCH-Chr6:47549431 HCH7g1551 HCH-Chr7:47972397 1.80E-62 dispersed
HCH7g0375 HCH-Chr7:2698268 HCH7g1551 HCH-Chr7:47972397 3.10E-21 dispersed
HCH7g1306 HCH-Chr7:46002643 HCH7g1551 HCH-Chr7:47972397 8.00E-61 dispersed
HCH7g1504 HCH-Chr7:47619708 HCH7g1551 HCH-Chr7:47972397 1.60E-64 dispersed
HCH7g1551 HCH-Chr7:47972397 HCH8g1127 HCH-Chr8:46973655 1.20E-62 dispersed
HCH7g1547 HCH-Chr7:47928116 HCH7g1551 HCH-Chr7:47972397 4.10E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1551 - - - 0.0