Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH7g1556 | ATGTCTGTTACTTTGCACACGAATCTCGGAGACATTAAGTGTGAGATTTTCTGCGATGAAGTCCCCAAGGCTGCCGAGAATTTTTTGGCACTATGTGCGAGTGGCTATTATGACGGAACCATATTCCATCGAAATATTAAAGGTTTTATGATACAAGGCGGAGATCCAACAGGCACGGGAAAAGGGGGGACCAGCATATGGGGCAAAAAATTTAATGATGAGATAAGAGAGTCACTTAAGCACAATGCAAGAGGGATACTATCAATGGCCAATAGTGGAGCAAATACAAATGGAAGCCAATTTTTCTTAACTTATGCAAAGCAGCCACATCTGAATGGATTATACACTGTCTTCGGCAGGGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGACCGGGAGATCGGCCGCTTGCGGAGATAAGGCTCAATCGGGTGACAATTCATGCTAATCCTCTTGCGGGCTAA | 483 | 43.69 | MSVTLHTNLGDIKCEIFCDEVPKAAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFLTYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 48029651 | 48031769 | - | evm.model.ptg000013l.1556 | HCH7g1556 | 548841 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH7g1556 | 160 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 160 | - | - | |
| HCH7g1556 | 160 | Gene3D | - | 1 | 160 | IPR029000 | - | |
| HCH7g1556 | 160 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 6 | 153 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PIRSF | Peptidylpro_ismrse | 1 | 157 | IPR024936 | GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 128 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 85 | 100 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 100 | 112 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 3 | 152 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| HCH7g1556 | 160 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 150 | IPR044666 | GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER) | |
| HCH7g1556 | 160 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 37 | 54 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| HCH7g1556 | 160 | SUPERFAMILY | Cyclophilin-like | 1 | 157 | IPR029000 | - | |
| HCH7g1556 | 160 | CDD | Cyclophilin_PPIL3_like | 1 | 153 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0364 | HCH-Chr14:32636697 | HCH7g1556 | HCH-Chr7:48029651 | 9.50E-49 | dispersed | |
| HCH3g1172 | HCH-Chr3:41850913 | HCH7g1556 | HCH-Chr7:48029651 | 1.10E-42 | dispersed | |
| HCH7g1556 | HCH-Chr7:48029651 | HCH8g0197 | HCH-Chr8:8044474 | 8.60E-29 | dispersed | |
| HCH7g1556 | HCH-Chr7:48029651 | HCH7g0626 | HCH-Chr7:6081072 | 2.60E-33 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH7g1556 | K12734 | - | csv:101211474 | 324.709 |