Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1556 ATGTCTGTTACTTTGCACACGAATCTCGGAGACATTAAGTGTGAGATTTTCTGCGATGAAGTCCCCAAGGCTGCCGAGAATTTTTTGGCACTATGTGCGAGTGGCTATTATGACGGAACCATATTCCATCGAAATATTAAAGGTTTTATGATACAAGGCGGAGATCCAACAGGCACGGGAAAAGGGGGGACCAGCATATGGGGCAAAAAATTTAATGATGAGATAAGAGAGTCACTTAAGCACAATGCAAGAGGGATACTATCAATGGCCAATAGTGGAGCAAATACAAATGGAAGCCAATTTTTCTTAACTTATGCAAAGCAGCCACATCTGAATGGATTATACACTGTCTTCGGCAGGGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGACCGGGAGATCGGCCGCTTGCGGAGATAAGGCTCAATCGGGTGACAATTCATGCTAATCCTCTTGCGGGCTAA 483 43.69 MSVTLHTNLGDIKCEIFCDEVPKAAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFLTYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 48029651 48031769 - evm.model.ptg000013l.1556 HCH7g1556 548841
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1556 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
HCH7g1556 160 Gene3D - 1 160 IPR029000 -
HCH7g1556 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755(InterPro)
HCH7g1556 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
HCH7g1556 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 150 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
HCH7g1556 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
HCH7g1556 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
HCH7g1556 160 CDD Cyclophilin_PPIL3_like 1 153 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0364 HCH-Chr14:32636697 HCH7g1556 HCH-Chr7:48029651 9.50E-49 dispersed
HCH3g1172 HCH-Chr3:41850913 HCH7g1556 HCH-Chr7:48029651 1.10E-42 dispersed
HCH7g1556 HCH-Chr7:48029651 HCH8g0197 HCH-Chr8:8044474 8.60E-29 dispersed
HCH7g1556 HCH-Chr7:48029651 HCH7g0626 HCH-Chr7:6081072 2.60E-33 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1556 K12734 - csv:101211474 324.709