Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1576 ATGGCTACTATGGGAAATCAAGAAGTTGAGAAAATGGTGAGAGGGAAGACACAGATGAGGCGCATCGAGAACGCCACGAGCCGGCAAGTGACCTTCTCGAAGCGGCGGAATGGGTTGCTGAAGAAGGCTTTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTTCCAGAGGAAAGCTCTATGAATTTGCTAGCTCTTGCATGCAGGCTACGTTAGGGCGCTATCTGAGGCACACAAAGACAAGGGATAGTCATCAAGTTGAACCCTTACCTATTCAACAAGATTTAGGAGTTGTTCAGCATGAGGCTACAACTTTGATGAAGAAGATAGAGGTTCTAGAAGTTTCAAAAAGGAAAATGTTGGGAGAAGGTCTGGGATCAAGCTCCTATGAAGAACTTCAAGAAATAGAACAGCAGCTAGAAAGGAGCTTAACCAATATTAGAGCAAGAAAGCATCAGATTTACAAGGAACAGATTGAAAAACTACAAGAAAAGGAGAAGTATCTGGCAGCTGAAAATGCGAAGCTCGGTGAAAAGTATTGTGTTCGTCAGCCTCAACAATCGCCAAACGAACAAGGAGAAATTTCACCTTACCCAGAAAGCAGCTCGATTTCAGACGTCGAAACTGACTTGTTCATCGGACCACCGGAGTCGAGACCGAAGCGATTGCTTGCTTTGCAAAATTGA 702 44.44 MATMGNQEVEKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSSRGKLYEFASSCMQATLGRYLRHTKTRDSHQVEPLPIQQDLGVVQHEATTLMKKIEVLEVSKRKMLGEGLGSSSYEELQEIEQQLERSLTNIRARKHQIYKEQIEKLQEKEKYLAAENAKLGEKYCVRQPQQSPNEQGEISPYPESSSISDVETDLFIGPPESRPKRLLALQN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48136186 48139707 - evm.model.ptg000013l.1576 HCH7g1576 548861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1576 233 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 Coils Coil 135 184 - -
HCH7g1576 233 MobiDBLite consensus disorder prediction 189 233 - -
HCH7g1576 233 SUPERFAMILY SRF-like 14 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH7g1576 233 MobiDBLite consensus disorder prediction 189 213 - -
HCH7g1576 233 ProSitePatterns MADS-box domain signature. 14 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH7g1576 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 FunFam MADS-box transcription factor 1 24 94 - -
HCH7g1576 233 CDD MADS_MEF2_like 14 85 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH7g1576 233 Gene3D - 24 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 SMART madsneu2 12 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 Pfam K-box region 104 184 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH7g1576 233 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH7g1576 233 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0459 HCH-Chr5:3088096 HCH7g1576 HCH-Chr7:48136186 2.80E-51 dispersed
HCH5g0768 HCH-Chr5:5694308 HCH7g1576 HCH-Chr7:48136186 4.40E-49 dispersed
HCH7g1576 HCH-Chr7:48136186 HCH9g0327 HCH-Chr9:2041713 5.40E-32 dispersed
HCH11g1176 HCH-Chr11:44079319 HCH7g1576 HCH-Chr7:48136186 3.20E-29 wgd
HCH13g1176 HCH-Chr13:38373318 HCH7g1576 HCH-Chr7:48136186 5.50E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33938 PF01486 K-box 4.50E-25 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1576 - - - 0.0