Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1594 ATGAATTTTGGTGCTCTCAACAATAGTAGTAATCACGGCGGTGGCGGTGACGGCGGAAGTGACGGCGGCGATTTCAAGCTTATGGCCACTAGTGCGGTTGCTCAGCCACGCCTTGTCACTCAGTCTTTTCCAAAATCCATGTTTACCACTCCAAGGCTCTCTCTTGCTCTTACTAATATAGATGGACTAGGGATCGGAGATATGATTCCGGTGCCGGCGAACGGTTTCGAGACTAATGTTAGAAGAAGAACAAGAGAAGAAGAACCGACGGAGAGTAGATCCGGCAGCGATAATATGGACGGTGGTGGTTCCGGTGACGATCTAGACGCCGCGGCCGATAACCCTAAGAAGAAGAAAAGATACCATCGCCATACTCCTCAGCAAATTCAAGAACTTGAAGCTATGTTCAAGGAATGTCCTCATCCTGATGAGAAACAAAGATCGGAGCTTAGTAGAAGACTTTCCTTGGAGACAAGACAAGTTAAATTTTGGTTTCAAAATCGTAGAACTCAAATGAAGACCCAATTGGAACGCCATGAAAATACCATACTCCGGCAAGAAAACGACAAGCTCCGGGCAGAAAACATGTCGATCCGAGAAGCCATGAGGAGCCCGAATTGCTCAAACTGCGGCGGTCCGGCAATAATCGGCGAAATATCACTTGAAGAGCAACAACTGAGGATCGAAAACATCCGTCTAAAAGACGAGTTAGACCGTGTTTGTGCTCTTGCCGGGAAGTTCATCGGCCGCCCTATAGCCCCACCATGTTTGGAGCTTGGAGTTGGAGGCAACAATTCTTTAGACAGTTTGAATACCAATTTGCCCGATTTTGGAGGTGGGATTCCAAGCAATTTGCTCGTTAACCGATCACCAACGGCAGCAACGGATTTGATCGGCGTCGATCGATGTATCGAAAGATCATCTATGTATCTAGAGCTTGCATTAACAGCCATGGATGAATTGGTTAAAATGGCTCATACTGATGAGCCATTGTGGATTAGAAGCTTAGAGGGATCAGGAAGAGAAATAATGAACAATGAAGAATATATGAGAATGTTTAGTCCTTGCATTGGCATGAAACCAAATGGGTTTGTCATGGAGGCTTCTAGAGAGACTGGTTTGGTCATTATTAATAGCTTAGCTCTTGTAGAGACTTTAATGGATTCCAATCGATGGTCGGAGATGTTTCCTAGTATCGTCGCCGTATCCTCCACCACCGACGTGATTTCCGGTGGCATGGGTGGAACCAGAAATGGTGCTCTTCAACTGATGCATGGTGAGCTTCAAGTTCTCTCTCCCATGGTTCCGGTGAGAGAGATGAACTTCCTCCGCTTCTGCAAGCAGCACGCCGAAGGGGTTTGGGGTGTCGTCGACGTCTCCATTGACGCCATAACCGACGCTTCTTCTTCTCCTTCTCCACTTTGTAGAAGACTTCCTTCTGGCTGTCTTGTTCATGACATGCCCAATGGTTACTCCAAGGTGATTTGGGTGGAACACACAGAATACGATGAAAGCCATGTTCATCAACTCTACCGCCCCCTTCTCAGCTCCGGCCTCGGCTTTGGTGCTCGCCGGTGGGTCACCGCCCTTCAACGGCAGTGCGACTGCCTCGCCGTCCTCATCTCCTCCTCCACCATCTCCTCCCGTGATCACACCGCAATAACGGCGAGCGGCCGGCGGAGCATGCTAAAGCTAGCGCAACGCATGACGGCGAACTTCTGCGCCGGCGTGTGCGCGTCAACGGTGTACAAATGGAACAGGCTAAACTCCGGCAACGTCGGGGAAGATATCCGAGTCATGACACGGAGGAGCGTCGACGACCCCGGTGAACCACCGGGCACCGTCCTGAGTGCCGCCACCGCCGTGTGGCTTCCTGCACCACCGCAAAGACTCTTTGATTTCCTCCGTGATGATCGGCTGAGAAGCGAGTGGGATATATTATCAAACGGCGGCCCCATGCAAGACATGCTCCACATTGCCAAAGGCCATGATCACCGGAATTCCGTCTCTCTCCTACGCGCCGCCGCTCTGAATTCCAACCAAAGCAATATGCTAATTCTACAAGAGACATGCACCGACGCTATAGGGTCACTTGTCATCTACGCGCCGGTGGATATTCCGGCCATGCAAGGCGTCATGAACGGCGGCGATTCGGCATACGTCGCATTGCTTCCATCCGGATTCGCTATCGTCCCGGATGGGGTGGCAAAAGACGGTAGCGCGTCGTTATTGACGGTGGCATTTCAAATTTTAGTAAATAGTTTACCAACGGAAAAACTGACGGTAGAGTCGGTGCATACCGTGAAGAATTTGATATCATGCACCGTGCAGAAAATCAAGGCCGCGATTGGGTGTGAGACATGA 2364 50.3 MNFGALNNSSNHGGGGDGGSDGGDFKLMATSAVAQPRLVTQSFPKSMFTTPRLSLALTNIDGLGIGDMIPVPANGFETNVRRRTREEEPTESRSGSDNMDGGGSGDDLDAAADNPKKKKRYHRHTPQQIQELEAMFKECPHPDEKQRSELSRRLSLETRQVKFWFQNRRTQMKTQLERHENTILRQENDKLRAENMSIREAMRSPNCSNCGGPAIIGEISLEEQQLRIENIRLKDELDRVCALAGKFIGRPIAPPCLELGVGGNNSLDSLNTNLPDFGGGIPSNLLVNRSPTAATDLIGVDRCIERSSMYLELALTAMDELVKMAHTDEPLWIRSLEGSGREIMNNEEYMRMFSPCIGMKPNGFVMEASRETGLVIINSLALVETLMDSNRWSEMFPSIVAVSSTTDVISGGMGGTRNGALQLMHGELQVLSPMVPVREMNFLRFCKQHAEGVWGVVDVSIDAITDASSSPSPLCRRLPSGCLVHDMPNGYSKVIWVEHTEYDESHVHQLYRPLLSSGLGFGARRWVTALQRQCDCLAVLISSSTISSRDHTAITASGRRSMLKLAQRMTANFCAGVCASTVYKWNRLNSGNVGEDIRVMTRRSVDDPGEPPGTVLSAATAVWLPAPPQRLFDFLRDDRLRSEWDILSNGGPMQDMLHIAKGHDHRNSVSLLRAAALNSNQSNMLILQETCTDAIGSLVIYAPVDIPAMQGVMNGGDSAYVALLPSGFAIVPDGVAKDGSASLLTVAFQILVNSLPTEKLTVESVHTVKNLISCTVQKIKAAIGCET 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48243759 48247655 + evm.model.ptg000013l.1594 HCH7g1594 548879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1594 787 ProSiteProfiles START domain profile. 303 539 IPR002913 GO:0008289(InterPro)
HCH7g1594 787 SUPERFAMILY Bet v1-like 308 536 - -
HCH7g1594 787 MobiDBLite consensus disorder prediction 1 23 - -
HCH7g1594 787 SUPERFAMILY Bet v1-like 565 780 - -
HCH7g1594 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 785 IPR042160 -
HCH7g1594 787 Coils Coil 169 201 - -
HCH7g1594 787 SMART HOX_1 116 179 IPR001356 GO:0003677(InterPro)
HCH7g1594 787 MobiDBLite consensus disorder prediction 1 15 - -
HCH7g1594 787 CDD START_ArGLABRA2_like 308 534 - -
HCH7g1594 787 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677(InterPro)
HCH7g1594 787 CDD homeodomain 118 175 IPR001356 GO:0003677(InterPro)
HCH7g1594 787 Pfam START domain 312 535 IPR002913 GO:0008289(InterPro)
HCH7g1594 787 SUPERFAMILY Homeodomain-like 99 175 IPR009057 -
HCH7g1594 787 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH7g1594 787 Gene3D - 107 191 - -
HCH7g1594 787 SMART START_1 312 536 IPR002913 GO:0008289(InterPro)
HCH7g1594 787 Pfam Homeodomain 118 173 IPR001356 GO:0003677(InterPro)
HCH7g1594 787 MobiDBLite consensus disorder prediction 79 94 - -
HCH7g1594 787 FunFam Homeobox-leucine zipper protein GLABRA 2 312 535 - -
HCH7g1594 787 MobiDBLite consensus disorder prediction 68 125 - -
HCH7g1594 787 FunFam Homeobox-leucine zipper protein HDG1 104 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0831 HCH-Chr14:36215430 HCH7g1594 HCH-Chr7:48243759 3.00E-177 dispersed
HCH2g0744 HCH-Chr2:51109525 HCH7g1594 HCH-Chr7:48243759 7.30E-203 dispersed
HCH3g0555 HCH-Chr3:3697787 HCH7g1594 HCH-Chr7:48243759 1.60E-178 dispersed
HCH7g0229 HCH-Chr7:1529625 HCH7g1594 HCH-Chr7:48243759 1.10E-201 dispersed
HCH7g1594 HCH-Chr7:48243759 HCH9g0441 HCH-Chr9:2808110 3.50E-139 dispersed
HCH11g1204 HCH-Chr11:44340270 HCH7g1594 HCH-Chr7:48243759 1.00E-236 wgd
HCH13g1161 HCH-Chr13:38075598 HCH7g1594 HCH-Chr7:48243759 3.10E-305 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33940 PF01852 START 4.00E-51 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1594 K09338 - csv:101222248 1112.83