Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1596 ATGCGTAATTCAATCCCTCAACCATCTTCTCCGGCTCCAGCAGTGGATAGTTCGCCTTTACTCGGCCACTCGGTCGCCGATGGATTTTTCCGTGGCCGGGGGTTTATTCGCCGGTCGCCTCAACCGCTACGTGGCGCGGTTCGCCTCCTGCGCCGCGCAAGTGGGAGACAGATGATGCTTCGTGAGCCCTCGGTTCGTGTCCGTGAGACTGCGGCGGAGCAGCTTGAGGAGCGGCAGAGTGATTGGGCGTATTCCAAACCGGTTATAGTGTTGGACCTTTTGTGGAACGTGGCTTTTGTGGGAATTAGTTTTACCATATTGGGGTTGAGTATGAATGAAAAACCTTCGGTGCCACTTAGGTTTTGGATCATTGGGTATGCATTGCAATGTGGTGTTCATATGGCGTGTGTTGCCGTTGAGTATAAGCGGCGGAGGGAGACGAGAGAGGTGGTGGGATTGGACCGGAGTGGGAGCTGGGAAAGTGGTGAGGATTCGAATTCGGTATCAGGAAGTGATAGGGATGATTATGCCACTGAGCAGACTGAGAGTGAGGAAGGATCTAGCAATCTTACAAAGCATATTGAGTCTGCAAATACAATGTTCTCATTCATCTGGTGGCTAATGGGCTTTTACTGGGTAACTGCTGGAGGCCAAACATTGATAGATGCTTCACCTCAGCTATACTGGCTTTGTATTACTTTTCTTGCGTTTGACGTTGTATTTGTTCTGATATGCGTTGCAATTGCGTGCCTTGTTGGTGTTGCTATTTGCTGCTGTCTCCCATGCATAATTGCTATATTATATGCGGTTACCGATCAGGAAGGAGCTACTAAGGAAGAGATTGAACACTTACCTAAGTACAAATTTCATAGAACAGACGATGTTGAGAAGGTGAATGGTGATATGCAAGAGTCTACTGGAGGAATAATGACTAAGTGTGACACTGATACGCCTACAGAGCGTTTTCTTGGTCAGGAAGACGCTGAGTGCTGCATCTGCCTTTCTGCATATGATGACGGGGCTGAACTGCGAGAACTTCCATGCAATCACCATTTCCACTGCAGCTGCATCGACAAATGGCTCTACATCAACGCTACCTGCCCTCTCTGCAAGTTCAACATCTTGAAGCCCGACAGTCTTTCAAGCGAGGAAGTGTGA 1158 48.7 MRNSIPQPSSPAPAVDSSPLLGHSVADGFFRGRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPVIVLDLLWNVAFVGISFTILGLSMNEKPSVPLRFWIIGYALQCGVHMACVAVEYKRRRETREVVGLDRSGSWESGEDSNSVSGSDRDDYATEQTESEEGSSNLTKHIESANTMFSFIWWLMGFYWVTAGGQTLIDASPQLYWLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQEGATKEEIEHLPKYKFHRTDDVEKVNGDMQESTGGIMTKCDTDTPTERFLGQEDAECCICLSAYDDGAELRELPCNHHFHCSCIDKWLYINATCPLCKFNILKPDSLSSEEV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48256709 48259145 + evm.model.ptg000013l.1596 HCH7g1596 548881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1596 385 PANTHER TARGET OF ERK KINASE MPK-1 45 375 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH7g1596 385 MobiDBLite consensus disorder prediction 155 189 - -
HCH7g1596 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 378 IPR013083 -
HCH7g1596 385 Pfam Ring finger domain 329 371 IPR001841 -
HCH7g1596 385 SMART ring_2 330 370 IPR001841 -
HCH7g1596 385 MobiDBLite consensus disorder prediction 159 174 - -
HCH7g1596 385 SUPERFAMILY RING/U-box 320 377 - -
HCH7g1596 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
HCH7g1596 385 FunFam E3 ubiquitin-protein ligase At1g12760 316 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0398 HCH-Chr4:2590064 HCH7g1596 HCH-Chr7:48256709 4.00E-41 dispersed
HCH6g0945 HCH-Chr6:44232508 HCH7g1596 HCH-Chr7:48256709 3.40E-124 dispersed
HCH7g1596 HCH-Chr7:48256709 HCH9g1235 HCH-Chr9:32208277 8.60E-67 dispersed
HCH7g1595 HCH-Chr7:48251277 HCH7g1596 HCH-Chr7:48256709 8.00E-214 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1596 - - - 0.0