Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1608 ATGCCATTCTTCATTGGTTGCATTTCACGCGCGTCAACGGCGAGTCGCCAAATGACCGCGCGAAAAGAATATCCAATTTCCCGCAAACGAATCAACAATAACCCCATCAGCCAGCCAAAGGCCATTTTACTGCCGTTGGATTTGATTGCATTGCTATGTATTTTAAGGTATTTGACTGTATGTCGGCGGTGGCTGAATGATTATCAGTTTTCGTCTGAGTATGTGATTGAGTTTTGGAAGGATTCTGCTAATATTTTGGGAACCATGGATTTCTCGTGTAGTAGTTGGAAGCAAAATGTGTTATGTTGTAGTGAAAGAACGTATTGTAATACGTTGAACCAATTTGGTGGTCCTGACAATGTGCTTAGAAGTAGAATTATCGGTGCCAAGTGGACTGGTGTTTCGAAAATAAATTTTAGAGTTCCCAAGAAGAGAAACAGAATTATTGCTCCTTGCAATTCTAATAATGTGAGTCTGGTTTGTGCGAGAAAGTTTGATGGTGGTTTGCAAATTTTGAATTATAAGAAATCCTTCATCTATAATAATGAGATCATTGGTAGAAGGTCAAGGATGGTTCAGTCAGAGTGTCAAAGCAATGATTCTTTAGCATTTATTGATGGAAATGGTAGAAATGTTGAATCTGTAGACAATAGTGACGGGGGTTCTAGAATAAGGCCTGCTGATGATGTAGGGCCAGCTGGTTCCAGAGAAGCTGGTGGAGAAGCAGGAGCTCCAGAAATGGATGCACCAACTGTGGATGAGCGTAGAGAATCACTGCAAATAGCCATGACAGAATTGGAAGTTGCAAGACTTAACAGTACCATGTTTGAAGAAAAGGCACAGAAAATATCAGAAGCTGCAATAGCCTTGCAAGATGAAGCAACACATGCTTGGAATGATGTGAACTCTACTCTTGATTCTATACAACTAATAGTGAACGAAGAAAATGCTGCCAAAGAAGCTGTTCAAAAAGCAACAATGGCTCTTTCATTAGCGGAAGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCATGCAAAGGGAGGAAATGATTCTACAGAAACTTCAACAGATAGCGAGGGAGAGCTTGATTGTAAGGAAGAACAAGAACTTGTGTTGGCTTCTCAGGAAGACATCAGAGAATGCCAGGAAAAATTGGAAATTTGTGATACCGAACTGAAACGCATACAAAGTAGAAAGGAAGAGTTGCAGAAAGAAGTAGATAGGTTGAATGAGTTGGCGGAAAAAGCGCAGATGAATGCCTTGAAAGCCGAGGAGGATGTAGCGAACATAATGCTTTTGGCTGAGCAAGCCGTTGCTTTTGAACTTGAGGCTGCAAAAAGGGTTAATGATGCTGAGATAGCATTGCAGAAAGTGGATAAATCTTCATCAAATTATGTTATTGACACCTCGAATGTTATTGAAGATCTTCTAAGTGACGATGATAAGGCAGTTTTAGGAGTTTCTGGTGATATTGCAGTTGAAATGGACAAAGATATGTCATTTGACGGTGATTCTTTGGCTGTCAAATCTACACCAGGTAGCTTTTCAGATTCTGAAGACATGAATCAAGCTTATGACTTTAGCGATAATGAGAATGGAAAATTGAGTTTAGACTCTTCAAAGGAGGTTGAATCTGGAGCAGAAAAGCCCATGATTTTGAGTCAAGCAAAAAAGCAGGAAGCACAGAACTCACCATCAAATGCTCCCAAGGCGCTTTTGAAAAAATCTTCTCGCTTTTTTTCAGCCTCATTCTTTTCTTTTACAGTTGATGGGACAGAGTTCACTCCAGCAACAGTCTTCCAGGGTCTCAAGGATTCCATGAAAAAGCAATTGCCGAAGCTAGTTGTTGGGTTATTACTGTTAGGAACAGGGATCACTATCTTTGCTACTCGAGCTGAGAGGAATTCTCAGATGTTGCCACAGCCAGATGTCATAACCACTAGCATTGATGAGGTTTCCCTGAGTACGAAGCCTTTGATTCAACAATTAAGGAAACTGCCTGAAAGAGTTAAAAAGTTAATTGCAAAGCTTCCTCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTTGATGTGTTGTGGCTATTGCTTGCTAGTGTTATATTTGTGCCAACATTCCAGAAACTTCCTGGAGGCAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTGATTGGACCGTATGGTCTCTCCATAATCCGTCACGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTCCTCCTGTTCAACATTGGCCTTGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGATCTGCCCAGGTTTTGGTTACTGCAGTGGTGGTTGGCTTGATTGCTCATCTTATCTGTGGGCAGCCGGGCCCAGCTGCAATTGTCATTGGAAATGGTTTGGCTTTGTCGTCCACTGCCGTCGTCCTGCAGGTGTTGCAAGAGCGAGGGGAGAGCACATCACGGCATGGGCGTGCAACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTGATACCTCTAATTTCACCTAATTCATCAAAAGGAGGGATTGGTTTTCAAGCCATTGCCGAAGCCCTTGGCCTGGCTGCTGTCAAGGCAATGATTGCTATTGCTGCCATAATAGCTGGTGGGCGCTTGCTACTTCGACCTATTTACAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTTCTTGTCATTCTGGGAACAAGTCTACTTACAGCCAGGGCCGGACTATCAATGGCACTGGGTGCCTTTCTAGCAGGTTTACTATTAGCAGAAACAGAATTCTCCTTACAGGTCGAGTCTGATATTGCTCCGTATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATTGATCCAAAACTACTTCTTTCAAACTTTCCAGTTATTACGGGGTCCTTGGCACTTCTTATTGGTGGGAAGACTATATTGGTTGCCTTGGTCGGTAGGCTTTTTGGCGTCTCAATTATATCTGCAATACGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCCTTTGTGGCATTTGGTGAAGCTGTCAATCAGGGTATAATGCCTTCTCACCTGTCCTCTTTATTGTTCCTCGTTGTTGGAATTTCAATGGCTCTTACACCGTGGCTAGCGGCTGGAGGCCAATTAATTGCTTCCCGTTTTGAGCAGCATGATGTTCGGAGTTTATTACCAGTCGAGAGTGAGACAGACGATTTGCAAGATCACATAATTATTTGTGGATTTGGACGAGTTGGACAGATCATTGCCCAGCTTCTGTCAGAGAGACTGATACCTTTTGTTGCTCTTGATGTGAGGAGTGATAGAGTGGCAGTTGGCCGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCTGGAAGCCGAGAGGTTCTTCATAAAATTGGTGCTGAAAGGGCATGTGCTGCAGCAATAACTCTGGATACTCCAGGTGCAAATTATAGAACTGTTTGGGCTCTGAGCAAGTATTTCCCGAATGTTAAAACTTTCGTTCGTGCTCACGATGTTGATCACGGTCTTAATTTGGAGAAAGCTGGGGCTACTGCGGTAGTTCCAGAGACTTTGGAACCAAGTTTACAGTTGGCTGCTGCAGTTCTTGCTCAGGCTAAACTACCCACATCGGAGATTGCCTCAACAATCAACGAGTTTAGGTCCCGACATTTATCCGAGCTCACTGAGCTATGCGAAGCCACCGGAAGTTCACTCGGGTATGGGTTTTCTCGAATGATGAGTAAACCTAAAGTTCAAACCTCCGATTCAGACGAAAACCAAGTCAGTGAAGGAACACTAGCTATTTGA 3882 43.1 MPFFIGCISRASTASRQMTARKEYPISRKRINNNPISQPKAILLPLDLIALLCILRYLTVCRRWLNDYQFSSEYVIEFWKDSANILGTMDFSCSSWKQNVLCCSERTYCNTLNQFGGPDNVLRSRIIGAKWTGVSKINFRVPKKRNRIIAPCNSNNVSLVCARKFDGGLQILNYKKSFIYNNEIIGRRSRMVQSECQSNDSLAFIDGNGRNVESVDNSDGGSRIRPADDVGPAGSREAGGEAGAPEMDAPTVDERRESLQIAMTELEVARLNSTMFEEKAQKISEAAIALQDEATHAWNDVNSTLDSIQLIVNEENAAKEAVQKATMALSLAEARLQVAIESLEHAKGGNDSTETSTDSEGELDCKEEQELVLASQEDIRECQEKLEICDTELKRIQSRKEELQKEVDRLNELAEKAQMNALKAEEDVANIMLLAEQAVAFELEAAKRVNDAEIALQKVDKSSSNYVIDTSNVIEDLLSDDDKAVLGVSGDIAVEMDKDMSFDGDSLAVKSTPGSFSDSEDMNQAYDFSDNENGKLSLDSSKEVESGAEKPMILSQAKKQEAQNSPSNAPKALLKKSSRFFSASFFSFTVDGTEFTPATVFQGLKDSMKKQLPKLVVGLLLLGTGITIFATRAERNSQMLPQPDVITTSIDEVSLSTKPLIQQLRKLPERVKKLIAKLPHQEVNEEEASLFDVLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLIAHLICGQPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAMIAIAAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGSLALLIGGKTILVALVGRLFGVSIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMPSHLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKIGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIASTINEFRSRHLSELTELCEATGSSLGYGFSRMMSKPKVQTSDSDENQVSEGTLAI 1293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48322025 48334189 - evm.model.ptg000013l.1608 HCH7g1608 548893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1608 1293 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 697 977 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
HCH7g1608 1293 Coils Coil 379 427 - -
HCH7g1608 1293 MobiDBLite consensus disorder prediction 512 549 - -
HCH7g1608 1293 MobiDBLite consensus disorder prediction 512 535 - -
HCH7g1608 1293 Pfam TrkA-N domain 1099 1212 IPR003148 GO:0006813(InterPro)
HCH7g1608 1293 ProSiteProfiles RCK N-terminal domain profile. 1098 1220 IPR003148 GO:0006813(InterPro)
HCH7g1608 1293 MobiDBLite consensus disorder prediction 1274 1293 - -
HCH7g1608 1293 FunFam K(+) efflux antiporter 2 chloroplastic 686 1072 - -
HCH7g1608 1293 Gene3D - 686 1074 IPR038770 -
HCH7g1608 1293 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 415 1291 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
HCH7g1608 1293 Gene3D - 1094 1258 - -
HCH7g1608 1293 MobiDBLite consensus disorder prediction 207 251 - -
HCH7g1608 1293 Pfam Sodium/hydrogen exchanger family 700 1067 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
HCH7g1608 1293 MobiDBLite consensus disorder prediction 343 364 - -
HCH7g1608 1293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1095 1237 IPR036291 -
HCH7g1608 1293 FunFam K(+) efflux antiporter 2 chloroplastic 1094 1258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0787 HCH-Chr7:13375083 HCH7g1608 HCH-Chr7:48322025 6.40E-93 dispersed
HCH7g1608 HCH-Chr7:48322025 HCH8g0658 HCH-Chr8:43354604 7.70E-35 dispersed
HCH7g1608 HCH-Chr7:48322025 HCH4g0540 HCH-Chr4:3508392 4.50E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1608 K03455 - csv:101213081 1795.79