Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1635 ATGGGAGGCTGCTGCTGTTCATCCAGAAAAGCTCATTTAAATGGAACTACAGTATATTACTATTGTCCTCTGGCTCTGGAGGAGCATGAGACATCAGAAACTTATAGCGGCACAGGCTCTATAATCGCTGGAGGACATATGGTTGATTCGAACCTGGATTTTTCAATACCGAACACTTACCGAGCCCCTCCTGCACCTCTCCCATATGATGTGGTTTTGAGATGTCCACAATACAAAGAAAACTCTATCAAAGAAACAATTTATGGATGCAGTTTAAAAACTTCATCAGCAGTGAAAATTGTTGGGGAATCAGACAATAAGTCCCAAGACAGCTCTTTGCTTGGAGCTCCTCCACGTAAACTAGAACATATTGAGTCAAATGACAGTGTTCCAACTCTGGTAGCCGAAGAAGACGATGTCTGTCCCATTTGTCTTGAAGAGTATGATTCAGAACATCCTGAAATTATTACAAAATGCAAGCACCACTTTCACCTCTCATGCCTTCTCGAATGGATGGAAAGGAGCGACGCATGTCCTATATGCGATAAGGAGATGATATTTGAGCAACCTTAA 573 42.06 MGGCCCSSRKAHLNGTTVYYYCPLALEEHETSETYSGTGSIIAGGHMVDSNLDFSIPNTYRAPPAPLPYDVVLRCPQYKENSIKETIYGCSLKTSSAVKIVGESDNKSQDSSLLGAPPRKLEHIESNDSVPTLVAEEDDVCPICLEEYDSEHPEIITKCKHHFHLSCLLEWMERSDACPICDKEMIFEQP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48514007 48515039 - evm.model.ptg000013l.1635 HCH7g1635 548920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1635 190 CDD RING-H2_AIRP1-like 137 185 - -
HCH7g1635 190 SUPERFAMILY RING/U-box 131 187 - -
HCH7g1635 190 SMART ring_2 141 181 IPR001841 -
HCH7g1635 190 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
HCH7g1635 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
HCH7g1635 190 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 187 - GO:0004842(PANTHER)|GO:0005829(PANTHER)
HCH7g1635 190 Pfam Ring finger domain 140 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1635 HCH-Chr7:48514007 HCH9g0329 HCH-Chr9:2050335 6.60E-20 dispersed
HCH5g0526 HCH-Chr5:3600598 HCH7g1635 HCH-Chr7:48514007 5.30E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1635 - - - 0.0