Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1640 ATGGCTGGAATTAGGTTTTCGATTTTGAAATCACTTTATTTGAAGCCTTTGCCTTATTCATTTCAATCTTACAACTCCTATACTAGAATTTCCAAATGTGTTGATAATGTTCTTAGACCATCAAATACTGTTCTAAATCATAAATACTATAAAGATGAATCTTGCAGTGACAGATTGAGAAATAATTCCTCTGCTGGTTTTTGTAGAGCGGCTTCTTCGCTATGTCGTTTACATATCCGACATTGTGATAGATATACTGATAATTCAACTATTCCTGCATCTTCAGTGAAATATTGGAAGACTCTACCTCTTGTTTCATTTAGTCATTTGTCAAATCCTCGATTGTATTCGTCGTCTTCGAGTAGTAAAGTTGATGTAACTGGAAGTAATGGTGTTCCAGCAGCTTCTGACGGTGGTGGTGGTGAAGTGGATATAGGTAATTCCGGTGTTGGAAGGGATTGGCTCGAAGGGGTTAAGGAGGCCTGGCAGAGTGCTGTAGATGCAGCAGCTTTTACTGGGGAAAAGGCTAAAGAATTGTCTGATGAATTGGCTCCTCATGTAGAACAACTCCTTGATTCGTACCCGTATCTTAGAAATGTAGTTGTTCCGGTGAGTGTGACGTTGACTGCGACTCTTTTGGCTTGGGTTGTAATGCCTAGGCTTTTGAAGAGGGTCCATAATTATTCAACGCGAGGTGCTGTAGCCATACTATCTGCTGAGCAGATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTGCGATATGTGATTACGTTCTTTGCGTTTTCTCAAATTGGCACGATGGTTGCACCGACCACTATAGCATCACATTATGTTCCACAGGCATGGAGAGGGGCTGTCATCACTTCCTTTGTTTGGTTTCTGTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGATCGCCCAGAGTTTTTCAGGGCTTGATCGGGAAAAGTTACTTACTCTAGACAAACTTTCATCTGTTGGGCTATTTGTAATTGGACTAATGGCTTTGGCTGAGGCATGTGGGGTGGCTGTTCAATCTATATTGACTGTTGGTGGCATTGGAGGGGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGTAATGTTTTAAGTGGCCTATCCATGCAGTTTTCACAGCCCTTCTCACTTGGAGATACAATTAAGGCTGGTTCTATTGAAGGTCAAGTGGTGGAAATGGGACTGATGACAACATCATTACTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTTTATTTTCTAGCCAGGTAATTGTGAACAAGTCACGAGCAAATTGGCGTGCCATCACCAATAAAATTCCCCTGCAAGTTGATGATCTTACTAAGATTTCTCGGATATCAGATAACATAAAGAGTATGCTTAAATCTCACCCTAAAGTATTCTTGGCAAAGGAGGCTCCTTATTGTTTTCTCTCTCGAGTTGAAAGTACGTATGCAGAATTAACGATCGGTTGCAACCTTATAAAGATGAGTAAAGACGAGTTTTATTCAGCGGAGCAAGATATTCTTCTTCAGTCCGTCAAGATAATCAAGGAACATGGTGCAACATTAGGCAGCACCACCCCAGATTGA 1614 41.33 MAGIRFSILKSLYLKPLPYSFQSYNSYTRISKCVDNVLRPSNTVLNHKYYKDESCSDRLRNNSSAGFCRAASSLCRLHIRHCDRYTDNSTIPASSVKYWKTLPLVSFSHLSNPRLYSSSSSSKVDVTGSNGVPAASDGGGGEVDIGNSGVGRDWLEGVKEAWQSAVDAAAFTGEKAKELSDELAPHVEQLLDSYPYLRNVVVPVSVTLTATLLAWVVMPRLLKRVHNYSTRGAVAILSAEQIPYEKSFWGALEDPLRYVITFFAFSQIGTMVAPTTIASHYVPQAWRGAVITSFVWFLYRWKTNVFSRALIAQSFSGLDREKLLTLDKLSSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFAARDILGNVLSGLSMQFSQPFSLGDTIKAGSIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIVNKSRANWRAITNKIPLQVDDLTKISRISDNIKSMLKSHPKVFLAKEAPYCFLSRVESTYAELTIGCNLIKMSKDEFYSAEQDILLQSVKIIKEHGATLGSTTPD 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48542139 48545942 + evm.model.ptg000013l.1640 HCH7g1640 548925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1640 537 Pfam Mechanosensitive ion channel, beta-domain 370 437 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1640 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 169 534 - -
HCH7g1640 537 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
HCH7g1640 537 Gene3D - 386 434 IPR023408 -
HCH7g1640 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 369 IPR011014 GO:0016020(InterPro)
HCH7g1640 537 Gene3D - 281 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1640 K22047 - - csv:101220483 687.567
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1640 . 69 534 Mechanosensitive Ion Channel Family AT4G00290 60.7 1.8e-154 542.7
HCH11g0771 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 55.7 7.4e-199 690.6
HCH4g0275 . 31 692 Mechanosensitive Ion Channel Family AT5G10490 57.5 3.2e-194 675.2
HCH4g0275 . 8 688 Mechanosensitive Ion Channel Family AT1G58200 57.7 7.7e-204 707.2
HCH11g0771 . 49 696 Mechanosensitive Ion Channel Family AT1G58200 51.6 3.0e-171 599.0
HCH2g0582 . 44 911 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.9e-256 881.3
HCH7g0440 . 73 847 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.3e-239 825.1
HCH2g0582 . 44 906 Mechanosensitive Ion Channel Family AT3G14810 54.9 7.1e-247 850.5
HCH7g0440 . 57 846 Mechanosensitive Ion Channel Family AT3G14810 53.9 5.6e-228 787.7
HCH2g0582 . 50 911 Mechanosensitive Ion Channel Family AT1G78610 58.5 7.1e-279 956.8
HCH7g0440 . 78 847 Mechanosensitive Ion Channel Family AT1G78610 60.1 7.4e-260 893.6
HCH7g0440 . 53 851 Mechanosensitive Ion Channel Family AT2G17000 55.1 7.5e-233 803.9
HCH2g0582 . 209 907 Mechanosensitive Ion Channel Family AT2G17000 60.0 9.2e-231 797.0
HCH2g0582 . 1 648 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.1e-161 566.2
HCH12g0472 . 57 727 Mechanosensitive Ion Channel Family AT5G19520 56.2 8.5e-204 707.2
HCH12g0472 . 48 727 Mechanosensitive Ion Channel Family AT5G12080 60.0 5.8e-221 764.2
HCH8g0615 . 33 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.7e-201 697.2
HCH6g1377 . 102 673 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.8e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33