Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1640 ATGGCTGGAATTAGGTTTTCGATTTTGAAATCACTTTATTTGAAGCCTTTGCCTTATTCATTTCAATCTTACAACTCCTATACTAGAATTTCCAAATGTGTTGATAATGTTCTTAGACCATCAAATACTGTTCTAAATCATAAATACTATAAAGATGAATCTTGCAGTGACAGATTGAGAAATAATTCCTCTGCTGGTTTTTGTAGAGCGGCTTCTTCGCTATGTCGTTTACATATCCGACATTGTGATAGATATACTGATAATTCAACTATTCCTGCATCTTCAGTGAAATATTGGAAGACTCTACCTCTTGTTTCATTTAGTCATTTGTCAAATCCTCGATTGTATTCGTCGTCTTCGAGTAGTAAAGTTGATGTAACTGGAAGTAATGGTGTTCCAGCAGCTTCTGACGGTGGTGGTGGTGAAGTGGATATAGGTAATTCCGGTGTTGGAAGGGATTGGCTCGAAGGGGTTAAGGAGGCCTGGCAGAGTGCTGTAGATGCAGCAGCTTTTACTGGGGAAAAGGCTAAAGAATTGTCTGATGAATTGGCTCCTCATGTAGAACAACTCCTTGATTCGTACCCGTATCTTAGAAATGTAGTTGTTCCGGTGAGTGTGACGTTGACTGCGACTCTTTTGGCTTGGGTTGTAATGCCTAGGCTTTTGAAGAGGGTCCATAATTATTCAACGCGAGGTGCTGTAGCCATACTATCTGCTGAGCAGATTCCTTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTGCGATATGTGATTACGTTCTTTGCGTTTTCTCAAATTGGCACGATGGTTGCACCGACCACTATAGCATCACATTATGTTCCACAGGCATGGAGAGGGGCTGTCATCACTTCCTTTGTTTGGTTTCTGTATCGCTGGAAAACAAATGTGTTCTCTCGAGCATTGATCGCCCAGAGTTTTTCAGGGCTTGATCGGGAAAAGTTACTTACTCTAGACAAACTTTCATCTGTTGGGCTATTTGTAATTGGACTAATGGCTTTGGCTGAGGCATGTGGGGTGGCTGTTCAATCTATATTGACTGTTGGTGGCATTGGAGGGGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGTAATGTTTTAAGTGGCCTATCCATGCAGTTTTCACAGCCCTTCTCACTTGGAGATACAATTAAGGCTGGTTCTATTGAAGGTCAAGTGGTGGAAATGGGACTGATGACAACATCATTACTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTTTATTTTCTAGCCAGGTAATTGTGAACAAGTCACGAGCAAATTGGCGTGCCATCACCAATAAAATTCCCCTGCAAGTTGATGATCTTACTAAGATTTCTCGGATATCAGATAACATAAAGAGTATGCTTAAATCTCACCCTAAAGTATTCTTGGCAAAGGAGGCTCCTTATTGTTTTCTCTCTCGAGTTGAAAGTACGTATGCAGAATTAACGATCGGTTGCAACCTTATAAAGATGAGTAAAGACGAGTTTTATTCAGCGGAGCAAGATATTCTTCTTCAGTCCGTCAAGATAATCAAGGAACATGGTGCAACATTAGGCAGCACCACCCCAGATTGA 1614 41.33 MAGIRFSILKSLYLKPLPYSFQSYNSYTRISKCVDNVLRPSNTVLNHKYYKDESCSDRLRNNSSAGFCRAASSLCRLHIRHCDRYTDNSTIPASSVKYWKTLPLVSFSHLSNPRLYSSSSSSKVDVTGSNGVPAASDGGGGEVDIGNSGVGRDWLEGVKEAWQSAVDAAAFTGEKAKELSDELAPHVEQLLDSYPYLRNVVVPVSVTLTATLLAWVVMPRLLKRVHNYSTRGAVAILSAEQIPYEKSFWGALEDPLRYVITFFAFSQIGTMVAPTTIASHYVPQAWRGAVITSFVWFLYRWKTNVFSRALIAQSFSGLDREKLLTLDKLSSVGLFVIGLMALAEACGVAVQSILTVGGIGGVATAFAARDILGNVLSGLSMQFSQPFSLGDTIKAGSIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIVNKSRANWRAITNKIPLQVDDLTKISRISDNIKSMLKSHPKVFLAKEAPYCFLSRVESTYAELTIGCNLIKMSKDEFYSAEQDILLQSVKIIKEHGATLGSTTPD 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48542139 48545942 + evm.model.ptg000013l.1640 HCH7g1640 548925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1640 537 Pfam Mechanosensitive ion channel, beta-domain 370 437 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1640 537 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 169 534 - -
HCH7g1640 537 SUPERFAMILY Sm-like ribonucleoproteins 370 435 IPR010920 -
HCH7g1640 537 Gene3D - 386 434 IPR023408 -
HCH7g1640 537 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 283 369 IPR011014 GO:0016020(InterPro)
HCH7g1640 537 Gene3D - 281 384 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1640 K22047 - csv:101220483 687.567