Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH7g1646 | ATGTCAGTATATGATGCTGCATTTGTAAATACAGAGCTTTCAAAACCAACTTCCATTTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCTTAGTCGGAGCTCTAATAGTTCTTGCCCTCTTCCTCCTCTCTCTTTGCCTCACTTCTAGAAAGAGAAATCGTCATAAAAACCAAACCCTTTTCCCAAAATCAAGCCATGCTGTTTCCACTCCAATAATTTCCAAAGAGATTCAGGAAATTGTACACCAATCGGCGCCGGATCATCACCGGAATGTTCAGCCGGAGATTCATGTGGAGATCGGAAAATTGGAACATCGTGTAGTTTTTTCAGATAGAGGTTCAAGTGGAGAAAGTAGAGGAACTGTGAGTGAAACAGCTTCATTTGGATCTGGAACAGTGGGTCCAGAGGTTTCACATCTTGGGTGGGGAAGATGGTATACTTTGAGAGAGCTTGAGGCAGCTACTAATGGATTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATTGTGTATTTAGGAGTTTTGAGTGATGGGACTAGAATTGCTGTCAAGAATCTGTTAAATAACAGGGGGCAAGCTGAGAGGGAATTCAAGGTGGAAGTGGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGTGTTGAGGGTGCATATAGGATGCTTGTTTATGAGTATGTTGACAATGGAAATCTAGACCAATGGCTTCATGGTGACGTTGGCAATGTCAGCCCCTTGACTTGGGAAATTCGTGTGAACGTCATACTGGGAACAGCAAAGGGACTAGCCTATCTTCATGAGGGTCTTGAACCTAAGGTTGTCCATCGGGATGTAAAGTCGAGCAACATACTACTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTCGGGCTTGCCAAGCTTCTTTGTTCCGAGAGGAGTTATGTGACCACCCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAATATGCTTGCACTGGAATGTTGAATGAGAAGAGTGACGTTTATAGCTTTGGAATACTGATAATGGAGTTAATTTCTGGGAGAAGCCCCGTTGATTATGGTAGACCGCAAGGAGAGGTCAATCTGGTGGACTGGTTAAAAACCATGGTTGGAGACCGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCTGAGAAGCCTCCTTCCAAAGCACTCAAGCGTGTTTTGCTGGTTGCTCTTCGGTGCGTTGATCCTGATGCTACAAAGAGACCAAAAATGGGACATGTCATCCACATGCTCGAGGCAGATAATTTGTTGTCTAATGATGAGAACCGGGTTGGGAGGGATTCTTCCCACTCAATTCAAGGTCATCACCATCAGAACCGTGCTGTTCCAAGAGAAGTGAACAAACACAAGGACGAAGGAACGTCTTCTAATATAAATGAAGGTGACAGTGATGGAAATGTTCAACATCCAAATAGATTACCTACCACCGTGAAGTGTTTGGTTGATCACCTAACCAGCTATGTTGATGGAATTGGTAGAAAACACGAACAAGATTGCAAAGCTGAAAATTGTATGCATCTGAGTCGTGGTCCCTGCAACCAGCAAATTTGGTGGAGACAACTCCATTCGCAAGTTATCGTTCATGTGCATTTGCTTTATCCTGATTGGACAAGTAAGAAGTGCTTTGCCATTTATAGTGATCGTCGGCTTCGAGTTGGCGTATTCATCGACAGATTCAGGTTGAAAAATGGAACAAAAAAACAAAACAAAACAAATACTAAAAGCGAAGAAAATTTCCAAAACCTCGGTTACGAACAAAGAAATTCTCCTCAAAAAGACATTACATCAACCTCCAATCAAATTCCTCCACGTCGTGCTTGTGGGCTCCCACTGTGTACCTTCTCGAAATTGAGGAATTCAGCTCCTCCTCCTTCAACGTTTTCTGGCTTCGACAATTTCCTAGAAATTTCCATTTGTTTTCCGAGGTTTCTAAATCTGTTAATGTTATAA | 2004 | 43.11 | MSVYDAAFVNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQTLFPKSSHAVSTPIISKEIQEIVHQSAPDHHRNVQPEIHVEIGKLEHRVVFSDRGSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGVLSDGTRIAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGNVSPLTWEIRVNVILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMELISGRSPVDYGRPQGEVNLVDWLKTMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSNDENRVGRDSSHSIQGHHHQNRAVPREVNKHKDEGTSSNINEGDSDGNVQHPNRLPTTVKCLVDHLTSYVDGIGRKHEQDCKAENCMHLSRGPCNQQIWWRQLHSQVIVHVHLLYPDWTSKKCFAIYSDRRLRVGVFIDRFRLKNGTKKQNKTNTKSEENFQNLGYEQRNSPQKDITSTSNQIPPRRACGLPLCTFSKLRNSAPPPSTFSGFDNFLEISICFPRFLNLLML | 667 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 48561545 | 48569196 | - | evm.model.ptg000013l.1646 | HCH7g1646 | 548931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH7g1646 | 667 | MobiDBLite | consensus disorder prediction | 437 | 475 | - | - | |
HCH7g1646 | 667 | CDD | STKc_IRAK | 164 | 430 | - | - | |
HCH7g1646 | 667 | SMART | serkin_6 | 158 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH7g1646 | 667 | Gene3D | Transferase(Phosphotransferase) domain 1 | 234 | 446 | - | - | |
HCH7g1646 | 667 | ProSiteProfiles | Protein kinase domain profile. | 158 | 435 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH7g1646 | 667 | MobiDBLite | consensus disorder prediction | 437 | 489 | - | - | |
HCH7g1646 | 667 | ProSitePatterns | Protein kinases ATP-binding region signature. | 164 | 186 | IPR017441 | GO:0005524(InterPro) | |
HCH7g1646 | 667 | FunFam | Putative receptor-like serine/threonine-protein kinase | 234 | 444 | - | - | |
HCH7g1646 | 667 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 280 | 292 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH7g1646 | 667 | SUPERFAMILY | Protein kinase-like (PK-like) | 137 | 430 | IPR011009 | - | |
HCH7g1646 | 667 | MobiDBLite | consensus disorder prediction | 111 | 130 | - | - | |
HCH7g1646 | 667 | Pfam | Protein tyrosine and serine/threonine kinase | 161 | 428 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH7g1646 | 667 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 138 | 233 | - | - | |
HCH7g1646 | 667 | PANTHER | OS01G0323000 PROTEIN | 8 | 469 | IPR052232 | - | |
HCH7g1646 | 667 | Gene3D | Phosphorylase Kinase; domain 1 | 140 | 233 | - | - | |
HCH7g1646 | 667 | MobiDBLite | consensus disorder prediction | 114 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0835 | HCH-Chr12:5452407 | HCH7g1646 | HCH-Chr7:48561545 | 1.00E-66 | dispersed | |
HCH14g0290 | HCH-Chr14:31355245 | HCH7g1646 | HCH-Chr7:48561545 | 3.90E-170 | dispersed | |
HCH4g0629 | HCH-Chr4:4123666 | HCH7g1646 | HCH-Chr7:48561545 | 6.90E-176 | dispersed | |
HCH7g0557 | HCH-Chr7:4445558 | HCH7g1646 | HCH-Chr7:48561545 | 2.20E-144 | dispersed | |
HCH7g1646 | HCH-Chr7:48561545 | HCH8g0026 | HCH-Chr8:1079082 | 9.80E-135 | dispersed | |
HCH11g1253 | HCH-Chr11:44682548 | HCH7g1646 | HCH-Chr7:48561545 | 1.00E-71 | wgd | |
HCH13g0776 | HCH-Chr13:7154685 | HCH7g1646 | HCH-Chr7:48561545 | 2.40E-47 | wgd | |
HCH6g1212 | HCH-Chr6:46558724 | HCH7g1646 | HCH-Chr7:48561545 | 3.40E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81668 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-45 | CL0016 | HCH | PK |
Pathway information
