Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1646 ATGTCAGTATATGATGCTGCATTTGTAAATACAGAGCTTTCAAAACCAACTTCCATTTTCGGCCTCCGTCTCTGGGTCGTCATCGGAATCTTAGTCGGAGCTCTAATAGTTCTTGCCCTCTTCCTCCTCTCTCTTTGCCTCACTTCTAGAAAGAGAAATCGTCATAAAAACCAAACCCTTTTCCCAAAATCAAGCCATGCTGTTTCCACTCCAATAATTTCCAAAGAGATTCAGGAAATTGTACACCAATCGGCGCCGGATCATCACCGGAATGTTCAGCCGGAGATTCATGTGGAGATCGGAAAATTGGAACATCGTGTAGTTTTTTCAGATAGAGGTTCAAGTGGAGAAAGTAGAGGAACTGTGAGTGAAACAGCTTCATTTGGATCTGGAACAGTGGGTCCAGAGGTTTCACATCTTGGGTGGGGAAGATGGTATACTTTGAGAGAGCTTGAGGCAGCTACTAATGGATTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATTGTGTATTTAGGAGTTTTGAGTGATGGGACTAGAATTGCTGTCAAGAATCTGTTAAATAACAGGGGGCAAGCTGAGAGGGAATTCAAGGTGGAAGTGGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGTGTTGAGGGTGCATATAGGATGCTTGTTTATGAGTATGTTGACAATGGAAATCTAGACCAATGGCTTCATGGTGACGTTGGCAATGTCAGCCCCTTGACTTGGGAAATTCGTGTGAACGTCATACTGGGAACAGCAAAGGGACTAGCCTATCTTCATGAGGGTCTTGAACCTAAGGTTGTCCATCGGGATGTAAAGTCGAGCAACATACTACTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTCGGGCTTGCCAAGCTTCTTTGTTCCGAGAGGAGTTATGTGACCACCCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAATATGCTTGCACTGGAATGTTGAATGAGAAGAGTGACGTTTATAGCTTTGGAATACTGATAATGGAGTTAATTTCTGGGAGAAGCCCCGTTGATTATGGTAGACCGCAAGGAGAGGTCAATCTGGTGGACTGGTTAAAAACCATGGTTGGAGACCGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCTGAGAAGCCTCCTTCCAAAGCACTCAAGCGTGTTTTGCTGGTTGCTCTTCGGTGCGTTGATCCTGATGCTACAAAGAGACCAAAAATGGGACATGTCATCCACATGCTCGAGGCAGATAATTTGTTGTCTAATGATGAGAACCGGGTTGGGAGGGATTCTTCCCACTCAATTCAAGGTCATCACCATCAGAACCGTGCTGTTCCAAGAGAAGTGAACAAACACAAGGACGAAGGAACGTCTTCTAATATAAATGAAGGTGACAGTGATGGAAATGTTCAACATCCAAATAGATTACCTACCACCGTGAAGTGTTTGGTTGATCACCTAACCAGCTATGTTGATGGAATTGGTAGAAAACACGAACAAGATTGCAAAGCTGAAAATTGTATGCATCTGAGTCGTGGTCCCTGCAACCAGCAAATTTGGTGGAGACAACTCCATTCGCAAGTTATCGTTCATGTGCATTTGCTTTATCCTGATTGGACAAGTAAGAAGTGCTTTGCCATTTATAGTGATCGTCGGCTTCGAGTTGGCGTATTCATCGACAGATTCAGGTTGAAAAATGGAACAAAAAAACAAAACAAAACAAATACTAAAAGCGAAGAAAATTTCCAAAACCTCGGTTACGAACAAAGAAATTCTCCTCAAAAAGACATTACATCAACCTCCAATCAAATTCCTCCACGTCGTGCTTGTGGGCTCCCACTGTGTACCTTCTCGAAATTGAGGAATTCAGCTCCTCCTCCTTCAACGTTTTCTGGCTTCGACAATTTCCTAGAAATTTCCATTTGTTTTCCGAGGTTTCTAAATCTGTTAATGTTATAA 2004 43.11 MSVYDAAFVNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQTLFPKSSHAVSTPIISKEIQEIVHQSAPDHHRNVQPEIHVEIGKLEHRVVFSDRGSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGVLSDGTRIAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLDQWLHGDVGNVSPLTWEIRVNVILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMELISGRSPVDYGRPQGEVNLVDWLKTMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSNDENRVGRDSSHSIQGHHHQNRAVPREVNKHKDEGTSSNINEGDSDGNVQHPNRLPTTVKCLVDHLTSYVDGIGRKHEQDCKAENCMHLSRGPCNQQIWWRQLHSQVIVHVHLLYPDWTSKKCFAIYSDRRLRVGVFIDRFRLKNGTKKQNKTNTKSEENFQNLGYEQRNSPQKDITSTSNQIPPRRACGLPLCTFSKLRNSAPPPSTFSGFDNFLEISICFPRFLNLLML 667
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 48561545 48569196 - evm.model.ptg000013l.1646 HCH7g1646 548931
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1646 667 MobiDBLite consensus disorder prediction 437 475 - -
HCH7g1646 667 CDD STKc_IRAK 164 430 - -
HCH7g1646 667 SMART serkin_6 158 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1646 667 Gene3D Transferase(Phosphotransferase) domain 1 234 446 - -
HCH7g1646 667 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1646 667 MobiDBLite consensus disorder prediction 437 489 - -
HCH7g1646 667 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524(InterPro)
HCH7g1646 667 FunFam Putative receptor-like serine/threonine-protein kinase 234 444 - -
HCH7g1646 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1646 667 SUPERFAMILY Protein kinase-like (PK-like) 137 430 IPR011009 -
HCH7g1646 667 MobiDBLite consensus disorder prediction 111 130 - -
HCH7g1646 667 Pfam Protein tyrosine and serine/threonine kinase 161 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1646 667 FunFam Probable serine/threonine-protein kinase At1g01540 138 233 - -
HCH7g1646 667 PANTHER OS01G0323000 PROTEIN 8 469 IPR052232 -
HCH7g1646 667 Gene3D Phosphorylase Kinase; domain 1 140 233 - -
HCH7g1646 667 MobiDBLite consensus disorder prediction 114 130 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0835 HCH-Chr12:5452407 HCH7g1646 HCH-Chr7:48561545 1.00E-66 dispersed
HCH14g0290 HCH-Chr14:31355245 HCH7g1646 HCH-Chr7:48561545 3.90E-170 dispersed
HCH4g0629 HCH-Chr4:4123666 HCH7g1646 HCH-Chr7:48561545 6.90E-176 dispersed
HCH7g0557 HCH-Chr7:4445558 HCH7g1646 HCH-Chr7:48561545 2.20E-144 dispersed
HCH7g1646 HCH-Chr7:48561545 HCH8g0026 HCH-Chr8:1079082 9.80E-135 dispersed
HCH11g1253 HCH-Chr11:44682548 HCH7g1646 HCH-Chr7:48561545 1.00E-71 wgd
HCH13g0776 HCH-Chr13:7154685 HCH7g1646 HCH-Chr7:48561545 2.40E-47 wgd
HCH6g1212 HCH-Chr6:46558724 HCH7g1646 HCH-Chr7:48561545 3.40E-31 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81668 PF07714 PK_Tyr_Ser-Thr 2.40E-45 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1646 - - - 0.0