Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1655 ATGGAAGAAGATTGGGATCTTCACGCCGTCGTCAGAGGTTGCTCCGCCACTCCCACCGCCGTCACCGCCACCACCGTGAATGAAACCAAAACCCCATCTTTTGCTGCCGCTGACTTTTTTTACAAAACTTCTTCAAATTCCACCGTTTTCCCTTTTGGTAGAGACCAAACAAATCATTTATTCTCTCTTCAAGATCACTTTGAAGCAACAACTAGCTCAACCCAAGAATTGCATGATCTTTATAAACCATTTTTCTTCAAATCTCAACCTCAGACATCTCCTCCTCCTCCTCCGCCGCCTCTGCCACCGCTATCGCCGCCGCAGGTTCTGCCTTCACCAACCACAACTCTCTCTCCTCCCTCTTCCTCTAAACCTCAATCCCAACAAAAACAACATAATCTTCTTCCTAAGCAGTCCCATGCAGGCTCCAATATCTCCGCCCCAAGATCCAAAAGAAGGAAGAATCAGCTAAAGAAAGTTTGTCAAGTTCCAGCGGAATCTCTCTCTTCAGATATATGGGCTTGGCGTAAATATGGCCAAAAACCTATTAAAGGATCTCCATATCCAAGAGGCTATTATAGATGTAGTAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCACCGACTCATCGGAATTCGCTCGCCGGTTCCACGAGGCAGAAGCCAGTCCCGACTCAGCCGGTCGATGGCGGTGAACCGAATAAAACCGAATCGAACCCAACCGCTTGCTCGCCGTCCAGGGACGACGAGGTTTTAGCCCAGAGTACGGTCTCTGAAAGCAAAGAAGAGAAGGAAGATTTGGTTGAAGATGAAGAAGATAACGATCTGGGTATTTCTGATATGATAGTAAATGATGATTTCTTTGTGGGTTTTGAAGAACTCGATAGTCCGGATTCCGGTGACTATTTTTCCGATCAGTTCCCGGCGAATTTTGGGATTCCGTGGTTGTTTAACAATGCCGCTACTGCCGCCGGCGGTATTTGA 1050 48.1 MEEDWDLHAVVRGCSATPTAVTATTVNETKTPSFAAADFFYKTSSNSTVFPFGRDQTNHLFSLQDHFEATTSSTQELHDLYKPFFFKSQPQTSPPPPPPPLPPLSPPQVLPSPTTTLSPPSSSKPQSQQKQHNLLPKQSHAGSNISAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPVPTQPVDGGEPNKTESNPTACSPSRDDEVLAQSTVSESKEEKEDLVEDEEDNDLGISDMIVNDDFFVGFEELDSPDSGDYFSDQFPANFGIPWLFNNAATAAGGI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48631499 48632853 + evm.model.ptg000013l.1655 HCH7g1655 548940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1655 349 MobiDBLite consensus disorder prediction 86 163 - -
HCH7g1655 349 MobiDBLite consensus disorder prediction 89 114 - -
HCH7g1655 349 MobiDBLite consensus disorder prediction 115 150 - -
HCH7g1655 349 Gene3D WRKY domain 153 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1655 349 MobiDBLite consensus disorder prediction 253 275 - -
HCH7g1655 349 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 295 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH7g1655 349 SUPERFAMILY WRKY DNA-binding domain 167 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1655 349 MobiDBLite consensus disorder prediction 227 246 - -
HCH7g1655 349 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1655 349 SMART WRKY_cls 169 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1655 349 FunFam WRKY transcription factor 22 153 223 - -
HCH7g1655 349 Pfam WRKY DNA -binding domain 171 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1655 349 MobiDBLite consensus disorder prediction 224 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1146 HCH-Chr14:38307451 HCH7g1655 HCH-Chr7:48631499 3.20E-39 dispersed
HCH3g0894 HCH-Chr3:7511438 HCH7g1655 HCH-Chr7:48631499 9.10E-39 dispersed
HCH7g0124 HCH-Chr7:825256 HCH7g1655 HCH-Chr7:48631499 1.60E-25 dispersed
HCH7g1655 HCH-Chr7:48631499 HCH8g1073 HCH-Chr8:46622608 3.90E-26 dispersed
HCH7g1655 HCH-Chr7:48631499 HCH7g1659 HCH-Chr7:48648061 1.60E-11 proximal
HCH5g0835 HCH-Chr5:6696951 HCH7g1655 HCH-Chr7:48631499 7.50E-38 wgd
HCH6g1221 HCH-Chr6:46628616 HCH7g1655 HCH-Chr7:48631499 4.10E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33947 PF03106 WRKY 4.80E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1655 K13425 - csv:101217082 357.066