Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1659 ATGGAGGAAGATGCCCAACAAAACCCGATTCCGCCACCGCCGCCGCCGCCGCCTTTTCCGTCTGTGGAACCTCATTCAGTCCTTCAAGACATTGATTGGGCCACCCTTTTCTCCGGCCAAAACAGTGAGAATGGAACTGAAAACTGCATGCCGGCGGTAGAAAGCTGCCGGTCATCGGAATTGAGTAGAAAGAAAGAAAAGGGCAATAACAGTGGAAGATGGAGAAAGGGAAAGACAACGACAAAGAGACCGAGGTTTGAATTTCAGACGAGAAGTGTGGAAGATATTCTCGATGATGGATATCGATGGCGAAAGTACGGACAAAAAGCTGTCAAAAACAGTATCTTTCCAAGGAGCTACTATAGGTGTACACACCACACATGCAATGTAAAGAAACAAGTTCAAAGGTTGTCAAAAGACAGAAGCATTGTTATGACAACTTATGAGGGAATTCATAATCATCCTTGTGAAATTCTCATGCAAACCCTAACTCCTCTTCTCAAGCAAATGCAGTTCCTATCAAGCTTCTAA 531 44.63 MEEDAQQNPIPPPPPPPPFPSVEPHSVLQDIDWATLFSGQNSENGTENCMPAVESCRSSELSRKKEKGNNSGRWRKGKTTTKRPRFEFQTRSVEDILDDGYRWRKYGQKAVKNSIFPRSYYRCTHHTCNVKKQVQRLSKDRSIVMTTYEGIHNHPCEILMQTLTPLLKQMQFLSSF 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48648061 48649402 + evm.model.ptg000013l.1659 HCH7g1659 548944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1659 176 SMART WRKY_cls 97 156 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1659 176 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1659 176 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 155 IPR044810 GO:0003700(InterPro)
HCH7g1659 176 MobiDBLite consensus disorder prediction 7 23 - -
HCH7g1659 176 Gene3D WRKY domain 82 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1659 176 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1659 176 MobiDBLite consensus disorder prediction 56 81 - -
HCH7g1659 176 SUPERFAMILY WRKY DNA-binding domain 91 155 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1659 176 MobiDBLite consensus disorder prediction 1 25 - -
HCH7g1659 176 FunFam WRKY transcription factor 57 83 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1190 HCH-Chr5:40914156 HCH7g1659 HCH-Chr7:48648061 3.00E-32 dispersed
HCH7g1659 HCH-Chr7:48648061 HCH9g0052 HCH-Chr9:321993 9.10E-32 dispersed
HCH7g1655 HCH-Chr7:48631499 HCH7g1659 HCH-Chr7:48648061 1.60E-11 proximal
HCH6g1222 HCH-Chr6:46631162 HCH7g1659 HCH-Chr7:48648061 9.40E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33948 PF03106 WRKY 2.00E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1659 - - - 0.0