Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1699 ATGAGTTCCCAGCAGCCAAAAACTGGAAGGTTTGCACATCCAGCAGCAGAAAGATCTTTAACTTCTGATTTCCATGTCAAAGATGGAAGTTACCAAAGGATAAACAGACTATCTCCAGGTGCAGTTTTGGAGAGCATACAGAAAACATTTGCTAGAGGTTCTGAGGGCTTCAGACTCATGAGAAAACATTTGAGCTTCAAGTATGCAGATGATCAGTCGGAAAAGAAAACGGTATTTTGGAAGAAAATTCTCGATCCTCAGCGGTCATTTCTACAGAAATGGAATAAGATATTCGTACTCTCCTGTTTCTTAGCTGTTGCTTTGGACCCTCTCTTCTTTTACATCCCATTAATTGATGGAGAACATAGATGCCTAACCATGGATCAACCCCTAGTGATCATTGCCTGCATTCTCCGTTCAGTCATTGACTTTTTTTATATACTTCATATGATCTTTGAATTTCGTACTGGTTTTGTTCGACCTTCTTCACTAGTATTTGGTAGAGGCGAATTAGTCGAAGATCCTGCAGCTATAGCTAAGAGATACCTGTCCTCATACTTTATAGTTGATATCTTGTCCATTCTCCCATTGCCTCAGTTTATGATATTAGTTATCCTACCTGGAATGAGAGGTCCAATGTCTCTGAATACAAAGCGCTTCATGAAGATTGTAATTCTCTCTCAATATGTTCCAAGGCTTCTTCGAATTTATCCGCTGTACAAAGAAGTAACGAGAACTTCTGGCATACTGACAGAAACAGCATGGAGTGGAGCTGCTTTAAATCTCTTTATTTATATGCTAGCTAGTCATGTAGTTGGTGCCATCTGGTATTTGTTCGCAGTGGAACAAGAAGAAAGGTGTTGGCGTCAGGCCTGTGATAAAGAACACCTTGATCATGATATTCTGTACTGTGGAGTACCGAGAAAACCGGCCCAGACGTTTGTAGATAAGCATTGCCCTCATAAAGAGCCTGAAGATGACAACCCAGATGCGTTCAACTATGGGATGTACATGGAAGCCATAAAGTTTCGTATAATCGAGTCCACAGATTTTCGTAAAAAATTCTTTTATTCCTTCTGGTGGGCTCTGCGCAATGTCAGCTCTAGCGGACAAAACATCAAAACAAGTACTAACTTGACTGAGCTTATTTTTGCTGTGTTCATTGCCATCCTTGGTTTGGTTTTATTTGCTTTGCTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAGAATAGAGCAGATGAGACTTAACAGAAGAGATGCAGAGCATTGGATGGCTCATCGCATGTTCCCCGAGCACTTGAGGCAACGTATTAGACGATACAGTCAGTACAAATGGCAGCTTAATAGAGGAGTTAAGGAGGAAGAACTTGTCAGTAACCTTCCTAAAGACCTTAGGAGAGACATTAAACACCATCTTTGCTTGGGTCTTCTCAAGAAAGTATCATTGTTTAACGGCTTGGATAAACAACTGTTGGATGCAATGTCCGAATACCTTAAGCCGGTTCTGTTCACAGAGAATAGCAAAATTCTTCAAGAGGGTGAACCAATTGATATGATGCTATTTATCATGAAAGGAAACCTAGCTACTTACGGTGAAAATACCGTCTTCTTCAACAAAGACACCCTTAAGGCTGGAGACTTTTGCGGGGAAGAGCTAATTACATGGGCTATGGATCTCAACTCCACTCTTCTTCCCATTTCCAATAGAACAGTTGAATCTCTGACTGAGGTTGAGGCCTTTGCTCTAACGGCGAGCGAGCTGCAATCTGTAGCACGTCAGTTCCATCGCCTCCACGGCAAGAAGCTCCAACTCACAGTGAGGCATGTTTTGTTCTACTCTAATCAATGGAGAAACTGGGCAGCCTGTAGAATACAAGAATTTTGGCGTGCTTACCATGATAGAAAACAGAAGAAGGGTGGATTGGAAAGAGAGGACAGGTTTCACAATTCTTCAGCTACTATGGGTGTCTCAGAAAGCTCTGATACCATACTATATGTATCTCATCTACTGCATTTGCAAGCAGTGCAGCAAAAAAACCAGCAAACTACTCAACACTCGTCGGTGATGACATTAGCACCGCCGCCCAACCCAGATGAACAAAAATACACTATCTTGAATCTTTAA 2136 41.43 MSSQQPKTGRFAHPAAERSLTSDFHVKDGSYQRINRLSPGAVLESIQKTFARGSEGFRLMRKHLSFKYADDQSEKKTVFWKKILDPQRSFLQKWNKIFVLSCFLAVALDPLFFYIPLIDGEHRCLTMDQPLVIIACILRSVIDFFYILHMIFEFRTGFVRPSSLVFGRGELVEDPAAIAKRYLSSYFIVDILSILPLPQFMILVILPGMRGPMSLNTKRFMKIVILSQYVPRLLRIYPLYKEVTRTSGILTETAWSGAALNLFIYMLASHVVGAIWYLFAVEQEERCWRQACDKEHLDHDILYCGVPRKPAQTFVDKHCPHKEPEDDNPDAFNYGMYMEAIKFRIIESTDFRKKFFYSFWWALRNVSSSGQNIKTSTNLTELIFAVFIAILGLVLFALLISNIQKYLQSTTVRIEQMRLNRRDAEHWMAHRMFPEHLRQRIRRYSQYKWQLNRGVKEEELVSNLPKDLRRDIKHHLCLGLLKKVSLFNGLDKQLLDAMSEYLKPVLFTENSKILQEGEPIDMMLFIMKGNLATYGENTVFFNKDTLKAGDFCGEELITWAMDLNSTLLPISNRTVESLTEVEAFALTASELQSVARQFHRLHGKKLQLTVRHVLFYSNQWRNWAACRIQEFWRAYHDRKQKKGGLEREDRFHNSSATMGVSESSDTILYVSHLLHLQAVQQKNQQTTQHSSVMTLAPPPNPDEQKYTILNL 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48882630 48896249 + evm.model.ptg000013l.1699 HCH7g1699 548984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1699 711 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
HCH7g1699 711 Pfam Ion transport protein 94 411 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1699 711 Gene3D - 96 410 - -
HCH7g1699 711 SMART cnmp_10 486 613 IPR000595 -
HCH7g1699 711 Gene3D Helix hairpin bin 412 477 - -
HCH7g1699 711 SUPERFAMILY cAMP-binding domain-like 416 607 IPR018490 -
HCH7g1699 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 668 - -
HCH7g1699 711 MobiDBLite consensus disorder prediction 685 711 - -
HCH7g1699 711 ProSiteProfiles IQ motif profile. 621 650 - -
HCH7g1699 711 CDD CAP_ED 486 611 IPR000595 -
HCH7g1699 711 Gene3D Jelly Rolls 484 600 IPR014710 -
HCH7g1699 711 SUPERFAMILY Voltage-gated potassium channels 86 408 - -
HCH7g1699 711 ProSiteProfiles cAMP/cGMP binding motif profile. 486 554 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1699 HCH-Chr7:48882630 HCH9g0186 HCH-Chr9:1095262 1.40E-163 dispersed
HCH7g1699 HCH-Chr7:48882630 HCH7g1700 HCH-Chr7:48899518 0.00E+00 tandem
HCH11g1301 HCH-Chr11:45003747 HCH7g1699 HCH-Chr7:48882630 1.40E-117 wgd
HCH5g0868 HCH-Chr5:7137778 HCH7g1699 HCH-Chr7:48882630 1.20E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1699 K05391 - csv:101206492 832.017