Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1700 ATGAGTTCCCAGCAGCCAAAAACTGTGAGGTTTGCACATCCAGCAGCAGAAAGATCTTTAACGTCTGATTTCCATGTCAAAGATGGAAGTTACCAAAGGAGAAACAGACTATCTCCAGGTGCAGTTTTGGAGAGCATACAGAGAAGATTTCTTAGAGGTTCTGAGGGCTTCAGACTCATGAGAAAACATTTAAGCTTCAAGTATGCAGATGATCAGTCGGAAAAGAAAACGGCATTTTGGAAGAAAATTCTTGATCCGCAGCGGTCATTTCTACAGAAATGGAATAAGATATTTGTACTCTCCTGTGTCTTAGCTGTTGCTGTGGACCCTCTCTTCTTTTACATCCCATTGGTTGATGGAAAACATAAATGCCTAACCATGGATAAACCCCTAGTGAGCATTGCCTGCGTTCTCCGTTCAGTTATTGACATATTTTATATACTTCATATGATCTTTGAATTTCGTACTGGTTTTGTGCAACCTTCTTCACTAGTATTTGGTAGAGGTGAATTAGTCGAAGATCCTGCAGCTATAGCTAAGAGATACCTGTCCTCATACTTTATAGTTGATATCTTGTCCATTCTCCCATTGCCTCAGTTTATGGTATTAGTTATCCTACCTGCAATGAGAGGTCCAATGCCTAGGAATACAAAGCACTTCATGAAGATTATAGTTCTCTCTCAATATGTTCCGAGGCTTCTTCGAATTTATCCGCTGTACAAAGAAGTAACGAGAACTTCTGGCATACTGACAGAAACAGCATGGAGTGGAGCTGCTTTAAATCTCTTTATTTATATGCTAGCTAGTCATGTAGTCGGTGCCATCTGGTATTTGTTCGCAGTGGAACAAGAAGAAAGGTGTTGGCTTCAGGCCTGTAAAAAAGAACACCGTGATCATGATATTCTGTACTGTGGAGTACCAAGAAGACCAGCCAACACGTTTGTAGATAAGCATTGCACTCAAAAAGAGCCTGAAGATGACAACCCGGACGCTTTCAACTATGGGATGTACATGGAAGCCCTTAAGTTTCGTATAATCGAGTCCACGGATTTTCGTTACAAATTCTTTTATTGCTTCTGGTGGGCTCTGCGCAATGTCGGCTCTAGCGGACAAAACCTCGAAACAAGTACTTACATGGGAGAGCTTTTTTTTGCTGTGTTCATTGCCATCCTTGGTTTGGTTTTATTTGCTTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGCTAGAATAGAGCAGATGAGACTTAATAGAAGAGATGCAGAGCATTGGATGGCACACCGTATGTTCCCCGAGGACTTGAGGCAACGTATTAGACGATACGGTCAGTACAAATGGCAGCTAAACAGAGGAGTTGAGGAAGAGGAACTTGTCAGTAACCTTCCTAAAGACCTTAGGAGAGACATTAAACGCCATCTTTGCTTGGGTCTTCTTAAGAAAGTATCATTGTTTAAAGGCATGGATAAACAACTGTTGGATGCAATGTCCGAATACCTTAAGCCGGTTCTGTTCACAGAGAAGAGCAAAATTCTTCAAGAGGGTGAACCAATTGATATGATGCTGTTTATCATGAAAGGAAACCTCGCTACGATTATTACTTACGGTGGAAAAACCGGCTTCTTCAACAAAGACACTCTTAAGGCTGGCGACTTTTGCGGGGAAGAGCTAATTACATGGGCTATGGATCTCAACTCCACTCTTCTTCCCATTTCCAGTAGAACAGTTGAATCTCTGACTGAGGTTGAGGCCTTTGCTCTAACGGCGAGCGAGCTGCAATCTGTAGCACGTCAGTTCCATCGCCTCCACGGCAAGAAGCTCCAACTCACAGTGAGGTTCTACTCTCATCAATGGAAAAACTGGGCAGCTTGTAAAATACAAGAAGCTTGGCGCGATTACCATAATAGAAAGAAGAAGAAGCGCGTATTGGAGAGGGGGGGCAGGTCTAAGGATGCTTTAGTCAAAACTATGGCTGCCTCAGAAACTAATGATGCAACTCAACACTCGGTGGTGATAGCATTGCCGCCGCCTGAGCTTCCAAAGCCAGATGAACCACAATTCACTATCTTGGATATTTAA 2085 42.49 MSSQQPKTVRFAHPAAERSLTSDFHVKDGSYQRRNRLSPGAVLESIQRRFLRGSEGFRLMRKHLSFKYADDQSEKKTAFWKKILDPQRSFLQKWNKIFVLSCVLAVAVDPLFFYIPLVDGKHKCLTMDKPLVSIACVLRSVIDIFYILHMIFEFRTGFVQPSSLVFGRGELVEDPAAIAKRYLSSYFIVDILSILPLPQFMVLVILPAMRGPMPRNTKHFMKIIVLSQYVPRLLRIYPLYKEVTRTSGILTETAWSGAALNLFIYMLASHVVGAIWYLFAVEQEERCWLQACKKEHRDHDILYCGVPRRPANTFVDKHCTQKEPEDDNPDAFNYGMYMEALKFRIIESTDFRYKFFYCFWWALRNVGSSGQNLETSTYMGELFFAVFIAILGLVLFALLISNIQKYLQSTTARIEQMRLNRRDAEHWMAHRMFPEDLRQRIRRYGQYKWQLNRGVEEEELVSNLPKDLRRDIKRHLCLGLLKKVSLFKGMDKQLLDAMSEYLKPVLFTEKSKILQEGEPIDMMLFIMKGNLATIITYGGKTGFFNKDTLKAGDFCGEELITWAMDLNSTLLPISSRTVESLTEVEAFALTASELQSVARQFHRLHGKKLQLTVRFYSHQWKNWAACKIQEAWRDYHNRKKKKRVLERGGRSKDALVKTMAASETNDATQHSVVIALPPPELPKPDEPQFTILDI 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48899518 48903290 + evm.model.ptg000013l.1700 HCH7g1700 548985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1700 694 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
HCH7g1700 694 SUPERFAMILY Voltage-gated potassium channels 86 408 - -
HCH7g1700 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 70 654 - -
HCH7g1700 694 Pfam Ion transport protein 94 412 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH7g1700 694 SUPERFAMILY cAMP-binding domain-like 415 609 IPR018490 -
HCH7g1700 694 ProSiteProfiles IQ motif profile. 621 650 - -
HCH7g1700 694 CDD CAP_ED 486 616 IPR000595 -
HCH7g1700 694 Gene3D Jelly Rolls 484 603 IPR014710 -
HCH7g1700 694 Gene3D Helix hairpin bin 412 477 - -
HCH7g1700 694 ProSiteProfiles cAMP/cGMP binding motif profile. 486 597 IPR000595 -
HCH7g1700 694 Gene3D - 95 410 - -
HCH7g1700 694 SMART cnmp_10 486 616 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1700 HCH-Chr7:48899518 HCH9g0186 HCH-Chr9:1095262 6.10E-172 dispersed
HCH7g1699 HCH-Chr7:48882630 HCH7g1700 HCH-Chr7:48899518 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1700 K05391 - csv:101206492 859.751