Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1715 ATGAAAAGAGAGGGAGGTTTGAGTAGTGTGGCTGGGAAAGATGAAGATAAGACTGTGATTGCTTCTGTTATAGGGACTAGAGCTTTTAATTACATGATATCTTGCTCAGTTTCAAATGAGAATCTGTTTATGACTTTGAAGAATGATGAGAATTGGCAGACTAAGCTTTCGGATCTGGTTGAAAGACCAAATTCATCCAATTTTAGCTGGAACTATGCAATTTTTTGGCAGCTTTCTCATTCAAAATCTGGTGAATGGGTTTTAGGATGGGGTGATGGATCTTGTAGAGAACCTAGGGATGGAGAGGAGATTGAAGCTTCACAGATTATTAGTCTTCGTCTCGAAGACGAGAGTCATCAGAGGATGAAGAAAAGAGCATTGCAGAAGCTTCACACACTATTTGGAGGTTCTGATGAGGATAATTATGCTCTTGGGTTGGACCGAGTTACGGATACGGAAATGTTCTTTCTTGTTTCTATGTATTTCTCCTTCCCCCGTGGAGAGGGTGGACCTGGGAAGTGTTTGGCATCTGGGAAACATATCTGGCATTTGGATGTGCTCAATTCGCCGTCTGAATATTGTGTGAGATCGTATTTGGCTAAATCTGCGGGAATTCGGACAGTTGTTTTGGTACCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAAAGCTTAGAATTAGTGCAGTTGATTAGATCATTGTTTTCGTCTCAACACTCGGTTGATAGAGTGAGACCATCAGCTCCCATGTCGATAGTGGCTGAAAGAAAAGATGAAAGCACCCATTTTGCAAGTTCGGGAATTGCAGAAAGAGGGGAAGGGGTTCCCAAGGTTTTTGGGCAGAATTTGAATTTGGGAAACGCAAGTCGATCTCAATTCAGAGAGAAATTGGCGGTTAGGAAAATGGACGACAGGTCATGGGAAGCATATGCAAATGGAGGTAGAATTCAGTTTCAAGGCCCTCGAAATGGCATTCACAGTTCAAGTTTGGCTCATGTTCAGAGTCTCAAACAAGGGAGCCTGACTGAAATCTATGGTTCTTCAAAACCCACCGGAAATAATAATCACGAGCTTGTTAATGTAGCTGGAGATGAATTTTGTCTAAACCCCTATCAATCACAAAAGCTGATGCAAATGCAAATTGATTTTTCCATGGCAACATCAAGGCCTTCTGCGGTTGCTCGTGTAGGTGCGGATTCTGAGCATTCAGATGTAGAGCCTCAGTGCAAAGAAGAGGGGCCAGGAACTGTGGATGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCTAACGGTAGAGAGGAACCACTCAATCATGTGGAGGCAGAGAGGCAGCGCCGTGAGAAGTTGAACCAGCGGTTCTATGCCTTACGAGCTGTTGTGCCCAATATCTCTAAGATGGACAAAGCTTCACTGTTGGGGGATGCCATTGCTTACATTAACGAGCTTCAAGCAAAAGTCAAGGCAATGGAATGGGAAAGGGAGAAGTCTGGGATCACCTCAAGTGATGCAAACCCTTCGGAGGCAAACCCGAATTTAGAAAATCAAAACCAATGCTTTGATGCTGATATTGATGTAGAAGCTGCACATGATGAAGTTATTGTGAGGGTTAGCTGCCCTTTGGAAACACATCCTGCATCAAGAGTCATCCAGGCCTTAAGAGACGTGCAGATAAATGTTGTTGATTCAAAATTCTCTGAAGCAAATGATACCATTACACACACATTTATCATCAACTCCTCAGGATCTGAACAGTTGACCAAGGAAACATTGATAGCTGCATTTTCCCACGATCCAAATACCGTACCACCTCTATCGTCAGTTGGGTAG 1845 43.52 MKREGGLSSVAGKDEDKTVIASVIGTRAFNYMISCSVSNENLFMTLKNDENWQTKLSDLVERPNSSNFSWNYAIFWQLSHSKSGEWVLGWGDGSCREPRDGEEIEASQIISLRLEDESHQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLVSMYFSFPRGEGGPGKCLASGKHIWHLDVLNSPSEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSLFSSQHSVDRVRPSAPMSIVAERKDESTHFASSGIAERGEGVPKVFGQNLNLGNASRSQFREKLAVRKMDDRSWEAYANGGRIQFQGPRNGIHSSSLAHVQSLKQGSLTEIYGSSKPTGNNNHELVNVAGDEFCLNPYQSQKLMQMQIDFSMATSRPSAVARVGADSEHSDVEPQCKEEGPGTVDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEWEREKSGITSSDANPSEANPNLENQNQCFDADIDVEAAHDEVIVRVSCPLETHPASRVIQALRDVQINVVDSKFSEANDTITHTFIINSSGSEQLTKETLIAAFSHDPNTVPPLSSVG 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48968235 48970079 - evm.model.ptg000013l.1715 HCH7g1715 549000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1715 614 FunFam Transcription factor bHLH13 432 505 - -
HCH7g1715 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 439 488 IPR011598 GO:0046983(InterPro)
HCH7g1715 614 PANTHER MYC 39 602 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
HCH7g1715 614 MobiDBLite consensus disorder prediction 404 450 - -
HCH7g1715 614 Gene3D - 432 502 IPR036638 GO:0046983(InterPro)
HCH7g1715 614 Pfam Helix-loop-helix DNA-binding domain 443 489 IPR011598 GO:0046983(InterPro)
HCH7g1715 614 MobiDBLite consensus disorder prediction 397 450 - -
HCH7g1715 614 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 240 IPR025610 -
HCH7g1715 614 CDD bHLH_AtAIB_like 436 510 - -
HCH7g1715 614 SMART finulus 445 494 IPR011598 GO:0046983(InterPro)
HCH7g1715 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 442 500 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0270 HCH-Chr5:1595608 HCH7g1715 HCH-Chr7:48968235 4.80E-60 dispersed
HCH6g1113 HCH-Chr6:45764486 HCH7g1715 HCH-Chr7:48968235 5.20E-61 dispersed
HCH6g1185 HCH-Chr6:46307534 HCH7g1715 HCH-Chr7:48968235 9.60E-31 dispersed
HCH7g0773 HCH-Chr7:12388252 HCH7g1715 HCH-Chr7:48968235 1.30E-13 dispersed
HCH7g1715 HCH-Chr7:48968235 HCH8g1061 HCH-Chr8:46542047 2.80E-11 dispersed
HCH5g0074 HCH-Chr5:456858 HCH7g1715 HCH-Chr7:48968235 7.10E-69 transposed
HCH10g0172 HCH-Chr10:1402596 HCH7g1715 HCH-Chr7:48968235 2.20E-115 wgd
HCH13g1075 HCH-Chr13:34483722 HCH7g1715 HCH-Chr7:48968235 3.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33954 PF14215 bHLH-MYC_N 1.40E-52 CL0161 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1715 - - - 0.0