Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1726 ATGGAGTCTTCTTCTGATAATGGTGCTGATTTTGTAGAGAAAGATCCAACTGGTAGATATGTTCGGTACAATGAAATCTTGGGAAGGGGAGCTTTCAAGACAGTTTATAAGGCATTTGATGAAGTTGATGGAATTGAAGTTGCCTGGAACCAAGTAAGGATCGATGACTTCTTGCGGTCACCTGAAGATTTGGAGAAATTGTATTCCGAAGTACATCTACTCAAATCATTAAAACATGAGAATATCATTAAGTTCTATAATTCATGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACCGAGCTCTTCACGTCTGGGAGTTTGAGGCAATATCGTAAAAAGCATAAAAATGTTGATATGAAGGCCATAAAGAATTGGGCACGGCAGATTCTTCGTGGGTTGGTCTATCTTCACAGTCATAATCCTCCTATTATTCATAGAGACTTGAAATGTGATAATATTTTTGTTAATGGAAATCAAGGAGAGGTTAAAATCGGAGATCTTGGATTAGCAATTGTTCTGCAGCAGCCTACTGCTCAAAGTGTAATTGGAACTCCTGAGTTTATGGCTCCCGAGCTTTATGAAGAGGAGTATAATGAGCTTGTTGATGTATATTCTTTCGGGATGTGCATGCTGGAGATGGTTACTTTTGAGTATCCGTATAATGAATGCCGAAATCCAGCTCAAATTTATAAGAAAGTTACCTCTGGTATCAAACCTGCTTCCCTTGCTAAGGTGAGTGATCCGCAAGTGAAGGAGTTTATCGATAGATGTCTGGTTCCCGCACATGAGAGATTGTGTGCAAAGGACCTTCTTAAAGATTTATTCCTTCAAGTTGAGAACCCAAAGGAGTCAATACGTGATCCCCTGCAGTTACCTAACCATGTTCCCAAAGCAATTAATTTGTTCAAGTCTGGGCCCCTTTCCATGGACATAGACATTGATTATAGACAACATTCTGTAAGCACTTGTACAGGAAGCAACTCTGAGAGTCCACACTTTCCAATTATGGAATTTCAGAGGATACATAAGGACAATGAGTTTAGGTTACGCGGGCATCGGAATGATGACAACTCGGTGGCATTAACCTTGCGTATTGCAGACTCACATGGTCGAGTGAGGAATATACATTTTATATTTTATCTCGATTCGGATACTGCACTATCAGTAGCAGCTGAAATGGCCGAGCAATTGGAGTTGGTAGATCATGATGTGGACTTCATTGCTGAATTTATTGATTACTTGATCACAAAACTTATACCTGGTTGGAAGCCCTTGTCTCATTATTCCACAAGTGGAGCAATAAATCTCTGTGGTAGCTTCCCTATCTTGAAAGATGCCAAATCATCTGTTGCATCTCCTTGGGATGCAATGTTAACCGAAGTTCATGCGGGGGTGGTCGAACAAGACGCTTTCTCTGGATTATTAGCAAGCACTCAAAAAGAGTGCTTGCAATCTGATGAAGTTGGCTGGGCAGATATCCCTGATAGTCATATTTGTAACAGTGACTGGCATTCTTCTCCAAGTTTGGCTAATTTTGAAGACCAGCATTCACAAGCGTCGGTTGCATCGGAGATACTGGTCGAAGATGGTTCCACCAAAAGTGGTAAAGCGGTGAATTCTGCTGGTTCTAACATCGATGGAAACTCGAAAGGTTCTAGAGGTTCTAGTTGGTCCATTGCTGAACTAGAGCTCCACGATCGAAACGCTGGCGACCCCGAAACTTTCACACCGTTGAATGATTTTGTGAAGAACTCAGTTATGTCATTGCCTGCTACAAGTGAAGTGTCTAATGTGATGAGCTTGACAAGCAGCTGTTCTTCACTATCCTTAGCAGACAAGGATCTGGATGCTGAACTGAAGATGGAAATCAATACCATCGAGACGCAATATCGGCAGTGGTTCGAAGAGCTATCCCGGATGAGGGAGGAGGCACTGGAGGGTGCCAGAAAGAGATGGATTGCAAAGAAGAAACTTGTTCATTAA 1989 41.73 MESSSDNGADFVEKDPTGRYVRYNEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDDFLRSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLVYLHSHNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVLQQPTAQSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYNECRNPAQIYKKVTSGIKPASLAKVSDPQVKEFIDRCLVPAHERLCAKDLLKDLFLQVENPKESIRDPLQLPNHVPKAINLFKSGPLSMDIDIDYRQHSVSTCTGSNSESPHFPIMEFQRIHKDNEFRLRGHRNDDNSVALTLRIADSHGRVRNIHFIFYLDSDTALSVAAEMAEQLELVDHDVDFIAEFIDYLITKLIPGWKPLSHYSTSGAINLCGSFPILKDAKSSVASPWDAMLTEVHAGVVEQDAFSGLLASTQKECLQSDEVGWADIPDSHICNSDWHSSPSLANFEDQHSQASVASEILVEDGSTKSGKAVNSAGSNIDGNSKGSRGSSWSIAELELHDRNAGDPETFTPLNDFVKNSVMSLPATSEVSNVMSLTSSCSSLSLADKDLDAELKMEINTIETQYRQWFEELSRMREEALEGARKRWIAKKKLVH 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49040484 49043427 + evm.model.ptg000013l.1726 HCH7g1726 549011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1726 662 CDD STKc_WNK 19 278 - -
HCH7g1726 662 SUPERFAMILY Protein kinase-like (PK-like) 23 279 IPR011009 -
HCH7g1726 662 MobiDBLite consensus disorder prediction 534 556 - -
HCH7g1726 662 Gene3D Transferase(Phosphotransferase) domain 1 104 283 - -
HCH7g1726 662 Coils Coil 625 645 - -
HCH7g1726 662 Gene3D - 359 424 - -
HCH7g1726 662 Pfam Protein kinase domain 24 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1726 662 FunFam Probable serine/threonine-protein kinase WNK1 6 102 - -
HCH7g1726 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 650 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH7g1726 662 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
HCH7g1726 662 SMART serkin_6 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1726 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1726 662 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
HCH7g1726 662 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0374 HCH-Chr3:2372024 HCH7g1726 HCH-Chr7:49040484 1.40E-143 dispersed
HCH5g0644 HCH-Chr5:4601707 HCH7g1726 HCH-Chr7:49040484 9.50E-164 dispersed
HCH7g1726 HCH-Chr7:49040484 HCH8g0180 HCH-Chr8:6924322 1.30E-131 dispersed
HCH7g1726 HCH-Chr7:49040484 HCH10g0772 HCH-Chr10:7501607 5.50E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81670 PF00069 Pkinase 1.70E-52 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1726 K08867 - csv:101204101 977.622