Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1747 ATGAACGTTAAAACTCCGGCGACGAGGACTCGTGTCGGAAAATACGAGCTCGGAAAAACCTTAGGCGAAGGTACTTTTGCTAAGGTTAAATTCGCTAAAAACGTCGAGACAGGTGATTATTTTGCTATCAAGATTCTTGACCGTGAAAAAGTTCTTCGTCATAAGATGGTCGAACAGATTAAAAGAGAGATTTCGACGATGAAACTTATAAAGCATCCTAACGTTGTTAGGATTTTTGAGGTTATGGCAAGCAAATCAAGAATCTATATTGTTCTTGAATTTGTGGATGGAGGGGAGCTCTTTGACAAAATAGCCACAAAGGGACGGCTTGGAGAGGATGAGGCAAGAAGATATTTTCATCAACTTATTAATGCTGTTGATTACTGCCATAGTAGAGGCGTGTATCATCGAGATCTCAAGCCTGAAAATCTTATTCTAGACACTAATGATGTCCTAAAAGTGTCAGATTTTGGATTGAGTGCATTTTCGCAGCAAGTTCGAGGGGATGGTCTGCTTCACACTGCATGTGGGACCCCAAACTATGTAGCTCCTGAGGTTTTCCATGATAAAGGTTATGATGGTACATCATCTGATATTTGGTCTTGTGGCGTCATACTCTTTGTTCTTATGGCTGGCTTTTTGCCTTTTGATGAGTCAAATCTCATGGCACTGTATAGAAAGATTTCAAGAGCTGATTTCTGCTTTCCACCATGGTTCTCAGATAGTGCCAAAAAATTAATTCGTCGTATTCTTGATCCAAATCCTCTAACCCGAATAACAATATCTGAAATTCAAGAAGATGGATGGTTTAAGAAAGGCTATACACATGCTCATTTTGAAATGGAAGAGGATATAAATCTCGATGATATCGATGTTGCTTTTAGTAGCTCAAAGGAACACCTCGTGACTGAAAGAAAAGAGAAACCTGTATCCATGAACGCTTTTGAGCTTATCTCAAGCTCACCGGGTTTCAGTCTTGAAACTCTATTTGAGAAGCAGAAGGCTGTGAAGAGAGAAACCCGGTTTACTTCCCAAAGCCCTGCAAATGAGATCATGTCAAAGATTGAAGAAACTGCTAAACCTCTAGGCTTTAATGTACGAAAGCGAGACTACAAGATGAAGTTACAAGGTGACAAGACTGGGAGGAAAGGGCATCTCTCTATAGCTACTGAGGTATTCGAGGTGGCTCCCTCCTTGCATATGGTGGAGCTTCGGAAAACTGGTGGCGACACGCTTGAGTTTCACAAGTTCTACAAAAGTTTCTCTTCAGGACTAAAAGACATAATGTGGAGAACTGAAGAAAGAAATGAAGAAGGAAGCTAA 1323 40.59 MNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVETGDYFAIKILDREKVLRHKMVEQIKREISTMKLIKHPNVVRIFEVMASKSRIYIVLEFVDGGELFDKIATKGRLGEDEARRYFHQLINAVDYCHSRGVYHRDLKPENLILDTNDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFHDKGYDGTSSDIWSCGVILFVLMAGFLPFDESNLMALYRKISRADFCFPPWFSDSAKKLIRRILDPNPLTRITISEIQEDGWFKKGYTHAHFEMEEDINLDDIDVAFSSSKEHLVTERKEKPVSMNAFELISSSPGFSLETLFEKQKAVKRETRFTSQSPANEIMSKIEETAKPLGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLKDIMWRTEERNEEGS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49176292 49180011 + evm.model.ptg000013l.1747 HCH7g1747 549032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1747 440 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1747 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH7g1747 440 FunFam Non-specific serine/threonine protein kinase 306 431 - -
HCH7g1747 440 CDD STKc_SnRK3 14 269 - -
HCH7g1747 440 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
HCH7g1747 440 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1747 440 FunFam Non-specific serine/threonine protein kinase 6 94 - -
HCH7g1747 440 CDD CIPK_C 313 427 - -
HCH7g1747 440 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
HCH7g1747 440 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH7g1747 440 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
HCH7g1747 440 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH7g1747 440 SUPERFAMILY Protein kinase-like (PK-like) 12 290 IPR011009 -
HCH7g1747 440 FunFam Non-specific serine/threonine protein kinase 8 310 - -
HCH7g1747 440 Pfam NAF domain 309 368 IPR004041 GO:0007165(InterPro)
HCH7g1747 440 Gene3D Transferase(Phosphotransferase) domain 1 95 277 - -
HCH7g1747 440 Gene3D Kinase associated domain 1, KA1 306 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0829 HCH-Chr3:6240969 HCH7g1747 HCH-Chr7:49176292 1.30E-181 dispersed
HCH4g0293 HCH-Chr4:1879796 HCH7g1747 HCH-Chr7:49176292 4.00E-140 dispersed
HCH6g1594 HCH-Chr6:49107869 HCH7g1747 HCH-Chr7:49176292 5.70E-45 dispersed
HCH6g1785 HCH-Chr6:50189761 HCH7g1747 HCH-Chr7:49176292 2.20E-114 dispersed
HCH7g0981 HCH-Chr7:40156758 HCH7g1747 HCH-Chr7:49176292 4.00E-121 dispersed
HCH7g1747 HCH-Chr7:49176292 HCH8g0843 HCH-Chr8:44916979 8.70E-140 dispersed
HCH5g0907 HCH-Chr5:7521262 HCH7g1747 HCH-Chr7:49176292 2.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81671 PF00069 Pkinase 2.70E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1747 - - - 0.0