Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH7g1755 ATGGGAGAGAAAGAAGAGGAGCTAGGGTTGAGTCTGAGCTTAGGTTATGGAGTAATGAGTCAACCTTCTTTTCAGCCGAATCACATGCATAGATCTTCCAGTTCCCACCCCGTCGCCATGCACAACAATCAGCAGCTCAGAAAGAATTCATGGAACGAACTTTTTCAATTTTCTGAGAGAAACTCGGATACGAGGTCGTTTCTTCGAGGGATCGACGTGAATCGAGCGCCGACGGCTGTGGACGGTGAGGAAGAAACCGGCGTTTCATCGCCGAACAGTACGATTTCTAGCGTTAGTGGGAAAAGGAGCGAAAGAGAAGTGGCCGGAGATGAGGCGGAGGCGGAGGCAGAAGCAGAGCGGGCATCGTGTTCACGAGGGAGCGACGATGAAGACGGAGGCGGTGAGGGTGACGGCGACGGCGACGCCTCAAGGAAGAAGCTGAGGCTATCAAAGGAGCAATCGTTGGTGCTGGAAGAGACTTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTCTGGTTCCAAAATAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTTGATTGTGAGTATTTGAAGAGGTGTTGTGAGAATTTAACAGAGGAAAACAGGAGGCTGCAGAAGGAGGTGCAAGAGCTTAGAGCTCTCAAACTTTCTCCACAGCTTTACATGCACATGAATCCTCCTACCACCCTCACCATGTGCCCTCAATGCGAGCGTGTCGCTGTCGCTTCCACCACTCCTCCCACCCGCCACCCGCCGCCAACTCCAGCAACCGCTGCTGCGCAGCGTCCCTTTCCGTGGGCAGTGCTGCCGATCCAACGTTAG 879 52.56 MGEKEEELGLSLSLGYGVMSQPSFQPNHMHRSSSSHPVAMHNNQQLRKNSWNELFQFSERNSDTRSFLRGIDVNRAPTAVDGEEETGVSSPNSTISSVSGKRSEREVAGDEAEAEAEAERASCSRGSDDEDGGGEGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVASTTPPTRHPPPTPATAAAQRPFPWAVLPIQR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 49218164 49220087 - evm.model.ptg000013l.1755 HCH7g1755 549040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH7g1755 292 MobiDBLite consensus disorder prediction 103 146 - -
HCH7g1755 292 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634(InterPro)
HCH7g1755 292 CDD homeodomain 144 201 IPR001356 GO:0003677(InterPro)
HCH7g1755 292 Gene3D - 137 205 - -
HCH7g1755 292 SUPERFAMILY Homeodomain-like 131 201 IPR009057 -
HCH7g1755 292 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH7g1755 292 MobiDBLite consensus disorder prediction 21 47 - -
HCH7g1755 292 Pfam Homeodomain 144 198 IPR001356 GO:0003677(InterPro)
HCH7g1755 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 276 IPR050762 -
HCH7g1755 292 MobiDBLite consensus disorder prediction 85 101 - -
HCH7g1755 292 Coils Coil 206 236 - -
HCH7g1755 292 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677(InterPro)
HCH7g1755 292 FunFam Homeobox-leucine zipper protein 18 128 205 - -
HCH7g1755 292 SMART HOX_1 142 204 IPR001356 GO:0003677(InterPro)
HCH7g1755 292 SMART halz 200 243 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH7g1755 292 MobiDBLite consensus disorder prediction 78 146 - -
HCH7g1755 292 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0326 HCH-Chr6:5047690 HCH7g1755 HCH-Chr7:49218164 5.10E-46 dispersed
HCH7g1755 HCH-Chr7:49218164 HCH8g1078 HCH-Chr8:46647974 9.80E-39 dispersed
HCH7g1755 HCH-Chr7:49218164 HCH6g1036 HCH-Chr6:45096222 4.70E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33957 PF04618 HD-ZIP_N 7.90E-32 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH7g1755 K09338 - csv:101222132 365.155